Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0396 ATGATTAATATTATAGAAGATTCAAAGAACTCTGCAGAAGAGAGAGCCTCTGCTGTTAGAAAAGCTGAAGAAGGAGCATCTGATCTAAGAGAATCAGTTGAAAAGCTGTCTAAGAACTTGGAGGATTACGAGAAAGAATATCAGGGGGTAGTAGCTGGCAAGGGAAGTGGAGATGAGGAAAAATGTCTTGAAGATCAACTAGGTGATGCTAAGGTAGCTGTTGGAAGTGCTGAAATAGAGCTAAAACAATTAAGAACAAAAATAAGCCATTGTGAAAAGGAACTTAAGGAGAAAACTAAACAATTATTGTCAAAGCGTGAAGAAGCTATTTCTGTAGAGAATGAGTTAAACGCTAAAAGAAAAGATGTAGAAAATATTAAGCTTGCATTGGAGTCTCTTCCATATAAAGAGGGCCAGTTAGAAGGTTTACAAAAGGAACGTGCATTTGAAATGGAGAGAGTACAGAAGCTGAAAGATGAGATACGCAACCTTTCAGCACAATTAGCCAACGTTGACTTCAAATACCGCGATCCTGTGAAAAATTTTGATAGGTCCAAGGTGAAAGGAGTAGTTGCAAAACTTATCAAAGTAAAGGATAGTTCTGCAATGACTGCCTTGGAGGTCACTGCCGGTGGAAAAATGTTTAATATAGTTGTAGACAATGAAAATACTGGAAAACAATTGCTTCAAAATGGTGATCTTCGGAGGAGAGTAACAATTATACCATTGAACAAGATACAATCCAATCCCGTTCCTCCAAGAATTCAACATGCTGCTGTCAAATTGGTTGGGAAGGAGAATGCAGAACTTGCACTTTCTTTAGTTGGGTATGATGAAGAATTGAAGAGTGCAATGGAGTATGTATTTGGTTCAACCTTTGTTTGCAAAAATACTGATTCTGCAAAAGAGGTTGCTTTTAACAGAGACATTCACACCCCAAGTGTTACACTTGAAGGTGACATTTTTCAGCCGAGTGGTCTATTGACGGGAGGAAGTCGCAAGGGTGGTGGCCAATTGTTGAGGCAACTTCATGATTTGGCTGGGATGGAAGCTGAACTTTCCATACATCAGAAAAAATTATTCGACATTGAAGCAAAGATTTCAGAGATCCTTCCAGTTCAAAAAAAGTTTGCAGACTTAAAGGCACAATTAGAGCTTAAGTTGTATGATCTCTCGTTGTTTCAGACAAGGGCAGAGCAAAATGAGCATCATAAGCTTGGTGAACTGGTGAAGAAGATTGAGCAGGAGCTCGAAGAAGCAAAAGCTGCTGCTAAAGGAAAGGAACTTGAATATAAAGATTGTATTAAGGCTGTGTCATTACTTGAAAAATCAGTCAAAGAACATGACAATAATCGGGAAGGAAGGCTAAAAGACCTCGAGCAAAAGATTAAGGCAACAAAATCTAAACTGCAGTCATGTTTAAAGGATTTAAAGGGGCATGAAAATGAAAGGGAGAGGCTTGTCATGGAAATGGAAGCTGTTGTACAAGAGAAGGCATCATTAGAGGCTCAATTAGTTGCTTTGAAAACACAAATTAACAGTCTAACCTCAGAACTAGAAGAACAGAAGATCAAGGTATTTTCCATTAAAAGTAATAATGAGCGGGCTCAGGCTGAGCTCAACACCATTCGTTTGAAGATGAAGGAATGTGATTCCCAAATCAACGACATTGTCAAAGAGCAGCAAGAACTTCAATATAAACTTAGTGAAATGAATATTGAGAGGAAGAAAGTGGAAAATGAGGTAAAACGGCTGGAGATGGAAAAGAAAGATTGTTCTGTTAGGGTAGACAAATTGGTTGAGAAACATGCTTGGATTGCATCTGAGAAACAGTTATTTGGAAAAAGTGGAACTGATTATGATTTTGAATCACGTGAGCCTTGTAAAGCTATAGAAGAACTCGAAAGACTGCAGGCTCAACAATCCAACCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCCATGTTTGAGAAAGCAGAGGATGAGTACAACGATTTGATGTCAAAGAAAAATATCATCGAGAACGATAAGTCTAAAATAAAGAAGGTGATCGAAGAATTAGATGAGAAAAAAAAGGAAACCCTGAAAGTTACATGGGTGAAAGTTAACGGTGACTTTGGTTCCATCTTTTCTACCTTACTACCTGGGACCACAGCTAAGCTAGAGCCTCCTGAAGGTTGTAGCTTCTTGGATGGTCTTGAAGTGCGGGTGGCATTTGGTGGTGTCTGGAAGCAGTCATTATCAGAATTAAGTGGAGGCCAACGATCTTTGTTGGCACTTTCTCTAATTTTAGCGTTGCTTCTCTTCAAACCAGCTCCACTTTATATATTGGATGAGGTTGATGCAGCTCTTGATCTTAGCCATACACAGAATATTGGGAGGATGATCAAAGCTCACTTCCCACATTCCCAGATGGTGTTTCTACTGTTCAGAGAACTATGGAAGTGTGAAGCCATGAGCTTAGAGTTTTGGGTGCAAAATCAGCCCGTGAATATGATTAGGGATGGTGGCGTGTATTGTGTATATGTTCTGTTTCTGTTTGCTTTGCTTCTCATTGCCTCTACTGTTTCTGCAACCAACAACACTCTTCCTTTGCTCCACAAATCTCGTATTCGTAAAATGGCTATGGAGTACAAAAATGTTGGGAAGGCGGCTGTGGTCGTTGTAGCAAAAGCAAAGAAACCAACTTCTGATGATGTCCCATGGGGGGGAGGTTATGTTCCTCCAATATTAAACAACCATTGA 2745 39.45 MINIIEDSKNSAEERASAVRKAEEGASDLRESVEKLSKNLEDYEKEYQGVVAGKGSGDEEKCLEDQLGDAKVAVGSAEIELKQLRTKISHCEKELKEKTKQLLSKREEAISVENELNAKRKDVENIKLALESLPYKEGQLEGLQKERAFEMERVQKLKDEIRNLSAQLANVDFKYRDPVKNFDRSKVKGVVAKLIKVKDSSAMTALEVTAGGKMFNIVVDNENTGKQLLQNGDLRRRVTIIPLNKIQSNPVPPRIQHAAVKLVGKENAELALSLVGYDEELKSAMEYVFGSTFVCKNTDSAKEVAFNRDIHTPSVTLEGDIFQPSGLLTGGSRKGGGQLLRQLHDLAGMEAELSIHQKKLFDIEAKISEILPVQKKFADLKAQLELKLYDLSLFQTRAEQNEHHKLGELVKKIEQELEEAKAAAKGKELEYKDCIKAVSLLEKSVKEHDNNREGRLKDLEQKIKATKSKLQSCLKDLKGHENERERLVMEMEAVVQEKASLEAQLVALKTQINSLTSELEEQKIKVFSIKSNNERAQAELNTIRLKMKECDSQINDIVKEQQELQYKLSEMNIERKKVENEVKRLEMEKKDCSVRVDKLVEKHAWIASEKQLFGKSGTDYDFESREPCKAIEELERLQAQQSNLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNGDFGSIFSTLLPGTTAKLEPPEGCSFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQMVFLLFRELWKCEAMSLEFWVQNQPVNMIRDGGVYCVYVLFLFALLLIASTVSATNNTLPLLHKSRIRKMAMEYKNVGKAAVVVVAKAKKPTSDDVPWGGGYVPPILNNH 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3363121 3408587 + Tan0000508.2 Tan01g0396 737820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0396 914 Gene3D - 81 258 - -
Tan01g0396 914 MobiDBLite consensus disorder prediction 8 30 - -
Tan01g0396 914 SUPERFAMILY Smc hinge domain 143 353 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Tan01g0396 914 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 7 812 - -
Tan01g0396 914 FunFam Structural maintenance of chromosomes 2 185 248 - -
Tan01g0396 914 SUPERFAMILY Tropomyosin 375 599 - -
Tan01g0396 914 Coils Coil 403 430 - -
Tan01g0396 914 Gene3D - 661 821 IPR027417 -
Tan01g0396 914 Coils Coil 140 174 - -
Tan01g0396 914 Pfam SMC proteins Flexible Hinge Domain 185 305 IPR010935 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Tan01g0396 914 Pfam RecF/RecN/SMC N terminal domain 537 811 IPR003395 -
Tan01g0396 914 SMART SMC_hinge_2 185 305 IPR010935 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Tan01g0396 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 807 IPR027417 -
Tan01g0396 914 Coils Coil 74 115 - -
Tan01g0396 914 Coils Coil 634 693 - -
Tan01g0396 914 Coils Coil 561 602 - -
Tan01g0396 914 Coils Coil 456 553 - -
Tan01g0396 914 Coils Coil 19 53 - -
Tan01g0396 914 Gene3D - 259 333 - -
Tan01g0396 914 MobiDBLite consensus disorder prediction 1 30 - -
Tan01g0396 914 Gene3D - 470 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0396 K06674 - - csv:101213132 1316.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0396 Tan-Chr1:3363121 Tan08g1007 Tan-Chr8:16093411 0.00E+00 dispersed
Tan01g0395 Tan-Chr1:3360971 Tan01g0396 Tan-Chr1:3363121 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1060 . . . . . . . . . . Cma06g01602 . . . Sed07g1127 . . Bhi01g01165 Tan01g0396 Cmetu06g1383 . . Mch10g1536 Lcy11g1280 . . . . . . . . . Cone18ag0902 . . . . Cme06g00857 . . . . . . . Bma06g01396 . Cmo06g01598 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007660 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 2 1 1 1 2 1 33