Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0414 ATGGCTGATTCCAGGGCTTTTCCTTCTCGCTGCGGAGCTGGAATCGTCAAAAGTATCCGCTTGGAGAATTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTTAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATTCTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGGACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAATTGAAAAATACTGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATTGAGAGAAGGATTTCCGAAGCCTCCGGTGCCATTGTTTTGAAAGATTGTCAAGGAAAAAAGGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTCGAGAACCCGTGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTCTTCTTCAAGGCTACTCTTCTTCAGCAAGTTGATGATCTGTTGAAAAACATTTTTGATCAATTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAACTAAATGAGCTGCGTGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTCCAACAATTAAAGAAAAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGGGCAAAGTGCAAAAATAGGAAAGCTCAAAGATCGCATTCCTATTTGTCGAGAAAAAATTGATCATCAACTGGTTCTGGCAGAAAAATTTAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCTAGCATGATGGAGAAAACTTCAGAAGTGAGGAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGCAAAATGAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTTCTTGAGCAACAAGTTCATGATATTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGCTCAAGGAACTCGAATTGGAGATTGATGCTGCTAAGTCAACAGTTATGAGGTTGAAAGAGGAGGAGAATGGCTTATTGGATAGCCTACACAGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAGAAAAAGCATTACGAATTTTCTCGCTCTATTCGAGAACTAAGGGAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAACATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGAAGCTAATTATAAGCAACTCCCAATTATTATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACTCTTTCAGTCATTCATTCTGAAAACCATACTGTCACCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTGGGCAAATCAGTCGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCGGTTAGAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATGCATCGAATGTGAAAGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTACGGGATATTGATGGGAACCTAAGCAATGCAAAGAGGAGATGTCAGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAAACTAGTTCATTACGTTCATCAAATGTTGACGAGCTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAAGTCACTTCTAGAAAAGTTTAGAGAGAGAATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTGTGTGAGTCCGCGAAAGGAGAAGTTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCTGCAGAAAAGGAGAAGAATCATTATGAAGGTATTATGACTAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAAACAATATCAGGAACTTGAGCGCCATCGTAAGGAGAGTTACAGTAAGGCTTCGATAATATGTCCTGAGAGTGAAATTGAAGCTTTAGGTGATTGGGATGAGAGCACACCCGAACAACTCAGTGCACAATTAATGAGGCTAAATCAGAGACTTAATAACGAGACCCGACGATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTGTAAGAAAACAACAGACTTACAAAAGTTTTAGAAAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAGTTGACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGTATCAGTGGACATATAAAAGTCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTAAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGCGATACCCGTGGGCTTTCAGGTGGAGAGCGGTCATTTTCCACTCTATGCTTCACCTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGACGCGGTAAGTCGGAAAATTAGCTTAGACACTCTTGTCGATTTTGCATTGGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATCGGCATGGTAAAACAAGGAGAACGTATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 40.77 MADSRAFPSRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIQVELKNTGEDAFKPGIYGNVIIIERRISEASGAIVLKDCQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQGQSAKIGKLKDRIPICREKIDHQLVLAEKFRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQKMAKRVRLLEQQVHDIHEQHIRNTQAEESEIEEKLKELELEIDAAKSTVMRLKEEENGLLDSLHSGRSEIKKIAEEIEGYEKKHYEFSRSIRELREHQTNKVTAFGGDRVIQLLRVIERQHRRFKKPPIGPIGAHLNLVNGDMWAPAVENAIGRLLNAFIVTDHRDSLLLRGCANEANYKQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVTNVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDDQIKSLEKDASNVKEEAEQCRKRKRAAEEQLRDIDGNLSNAKRRCQSAERFLMSKNLELQDLRKSQVAETSSLRSSNVDELHQEISKIQEEIQENKSLLEKFRERMKEAEAKAKDLKVSFENLCESAKGEVDAFEEAERDMLQIERDLHSAEKEKNHYEGIMTNKVLFDIKEAEKQYQELERHRKESYSKASIICPESEIEALGDWDESTPEQLSAQLMRLNQRLNNETRRCSESLEDLRMMYEKKERTIVRKQQTYKSFRKKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3762985 3781426 - Tan0005626.1 Tan01g0414 737838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0414 1052 Coils Coil 766 786 - -
Tan01g0414 1052 Coils Coil 362 396 - -
Tan01g0414 1052 Coils Coil 404 424 - -
Tan01g0414 1052 Coils Coil 189 223 - -
Tan01g0414 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Tan01g0414 1052 Pfam RecF/RecN/SMC N terminal domain 16 1045 IPR003395 -
Tan01g0414 1052 Coils Coil 312 332 - -
Tan01g0414 1052 Coils Coil 340 360 - -
Tan01g0414 1052 Gene3D - 15 272 IPR027417 -
Tan01g0414 1052 Gene3D - 847 1047 IPR027417 -
Tan01g0414 1052 Gene3D - 628 799 - -
Tan01g0414 1052 Coils Coil 850 888 - -
Tan01g0414 1052 Coils Coil 628 676 - -
Tan01g0414 1052 Coils Coil 795 822 - -
Tan01g0414 1052 Coils Coil 710 758 - -
Tan01g0414 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 1042 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0414 K22804 - - csv:101208493 1865.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0414 Tan-Chr1:3762985 Tan06g0626 Tan-Chr6:4768270 4.00E-17 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0626 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 70.1 0.0e+00 1395.6
Tan06g0629 . 4 975 Structural Maintenance of Chromosomes family AT5G15920 68.8 0.0e+00 1268.1
Tan06g0627 . 4 973 Structural Maintenance of Chromosomes family AT5G15920 68.8 0.0e+00 1264.2
Tan06g0628 . 4 929 Structural Maintenance of Chromosomes family AT5G15920 67.6 0.0e+00 1181.4
Tan01g0414 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 63.6 0.0e+00 1260.0
Tan01g0414 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 66.2 0.0e+00 1323.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32