Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0414 ATGGCTGATTCCAGGGCTTTTCCTTCTCGCTGCGGAGCTGGAATCGTCAAAAGTATCCGCTTGGAGAATTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTTAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATTCTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGGACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAATTGAAAAATACTGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATTGAGAGAAGGATTTCCGAAGCCTCCGGTGCCATTGTTTTGAAAGATTGTCAAGGAAAAAAGGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTCGAGAACCCGTGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTCTTCTTCAAGGCTACTCTTCTTCAGCAAGTTGATGATCTGTTGAAAAACATTTTTGATCAATTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAACTAAATGAGCTGCGTGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTCCAACAATTAAAGAAAAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGGGCAAAGTGCAAAAATAGGAAAGCTCAAAGATCGCATTCCTATTTGTCGAGAAAAAATTGATCATCAACTGGTTCTGGCAGAAAAATTTAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCTAGCATGATGGAGAAAACTTCAGAAGTGAGGAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGCAAAATGAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTTCTTGAGCAACAAGTTCATGATATTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGCTCAAGGAACTCGAATTGGAGATTGATGCTGCTAAGTCAACAGTTATGAGGTTGAAAGAGGAGGAGAATGGCTTATTGGATAGCCTACACAGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAGAAAAAGCATTACGAATTTTCTCGCTCTATTCGAGAACTAAGGGAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAACATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGAAGCTAATTATAAGCAACTCCCAATTATTATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACTCTTTCAGTCATTCATTCTGAAAACCATACTGTCACCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTGGGCAAATCAGTCGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCGGTTAGAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATGCATCGAATGTGAAAGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTACGGGATATTGATGGGAACCTAAGCAATGCAAAGAGGAGATGTCAGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAAACTAGTTCATTACGTTCATCAAATGTTGACGAGCTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAAGTCACTTCTAGAAAAGTTTAGAGAGAGAATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTGTGTGAGTCCGCGAAAGGAGAAGTTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCTGCAGAAAAGGAGAAGAATCATTATGAAGGTATTATGACTAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAAACAATATCAGGAACTTGAGCGCCATCGTAAGGAGAGTTACAGTAAGGCTTCGATAATATGTCCTGAGAGTGAAATTGAAGCTTTAGGTGATTGGGATGAGAGCACACCCGAACAACTCAGTGCACAATTAATGAGGCTAAATCAGAGACTTAATAACGAGACCCGACGATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTGTAAGAAAACAACAGACTTACAAAAGTTTTAGAAAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAGTTGACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGTATCAGTGGACATATAAAAGTCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTAAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGCGATACCCGTGGGCTTTCAGGTGGAGAGCGGTCATTTTCCACTCTATGCTTCACCTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGACGCGGTAAGTCGGAAAATTAGCTTAGACACTCTTGTCGATTTTGCATTGGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATCGGCATGGTAAAACAAGGAGAACGTATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 40.77 MADSRAFPSRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIQVELKNTGEDAFKPGIYGNVIIIERRISEASGAIVLKDCQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQGQSAKIGKLKDRIPICREKIDHQLVLAEKFRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQKMAKRVRLLEQQVHDIHEQHIRNTQAEESEIEEKLKELELEIDAAKSTVMRLKEEENGLLDSLHSGRSEIKKIAEEIEGYEKKHYEFSRSIRELREHQTNKVTAFGGDRVIQLLRVIERQHRRFKKPPIGPIGAHLNLVNGDMWAPAVENAIGRLLNAFIVTDHRDSLLLRGCANEANYKQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVTNVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDDQIKSLEKDASNVKEEAEQCRKRKRAAEEQLRDIDGNLSNAKRRCQSAERFLMSKNLELQDLRKSQVAETSSLRSSNVDELHQEISKIQEEIQENKSLLEKFRERMKEAEAKAKDLKVSFENLCESAKGEVDAFEEAERDMLQIERDLHSAEKEKNHYEGIMTNKVLFDIKEAEKQYQELERHRKESYSKASIICPESEIEALGDWDESTPEQLSAQLMRLNQRLNNETRRCSESLEDLRMMYEKKERTIVRKQQTYKSFRKKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3762985 3781426 - Tan0005626.1 Tan01g0414 737838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0414 1052 Coils Coil 766 786 - -
Tan01g0414 1052 Coils Coil 362 396 - -
Tan01g0414 1052 Coils Coil 404 424 - -
Tan01g0414 1052 Coils Coil 189 223 - -
Tan01g0414 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Tan01g0414 1052 Pfam RecF/RecN/SMC N terminal domain 16 1045 IPR003395 -
Tan01g0414 1052 Coils Coil 312 332 - -
Tan01g0414 1052 Coils Coil 340 360 - -
Tan01g0414 1052 Gene3D - 15 272 IPR027417 -
Tan01g0414 1052 Gene3D - 847 1047 IPR027417 -
Tan01g0414 1052 Gene3D - 628 799 - -
Tan01g0414 1052 Coils Coil 850 888 - -
Tan01g0414 1052 Coils Coil 628 676 - -
Tan01g0414 1052 Coils Coil 795 822 - -
Tan01g0414 1052 Coils Coil 710 758 - -
Tan01g0414 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 1042 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0414 Tan-Chr1:3762985 Tan06g0626 Tan-Chr6:4768270 4.00E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0414 K22804 - csv:101208493 1865.51