Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0440 ATGAAGCTCCAAAATGATCTCTTTGGTGACCCAAATCTTCTCTGCAACAAAACCCCATTAACTTATTCCGATCTTTTCTCTTCTTTAACCGATCAATGGGGCGATTTGCCTCTAAAACTCAACGATTCTCACGATATGATTGTCTTCAATTCCCTTCACGACGCCGTCGTTTTTGGCCTTTCTCCTCTAGATTCCATCCACCTCCCGGAGTTTTCCTCCGCCATCAAAACAGAGCCCTTTCTGACCACCGCTGCGGAGACAGAGGCGCCTTCGATGGGTGCTCGGGGGCGGCGCTACCGCGGGGTTCGCCGGCGGCCGTGGGGGAAGTACGCGTCGGAGATTCGGGATCCGGCGAAGTGTGGCGCACGTGTGTGGCTCGGCACGTACGAGACGGCTGAGGACGCGGCTTTGGCTTACGATCGAGCCGCCTTCAGAATGCGCGGCTCTAAGGCTCTTCTTAACTTTCCCAACCGCATTGGCTCCGGCGACCCACCGCCAATGAGAATCTCGGCTCGCCGCCGGGAACATGACCTCGTTGTTCCTTTGGCTAACGGCTCGGCTAAGAGGAGAAAAGCCGCGGCTAATAAAGAAGCCGAGCCGAAGATAGAGCCGGATTCGCGTGTGTTCCAGGAGGACTCGATATGTGGGACACCCATATACCGAACATCGATGCTCACCGCAAAGGCCAAAGGTCCTTGGATTTAG 705 55.46 MKLQNDLFGDPNLLCNKTPLTYSDLFSSLTDQWGDLPLKLNDSHDMIVFNSLHDAVVFGLSPLDSIHLPEFSSAIKTEPFLTTAAETEAPSMGARGRRYRGVRRRPWGKYASEIRDPAKCGARVWLGTYETAEDAALAYDRAAFRMRGSKALLNFPNRIGSGDPPPMRISARRREHDLVVPLANGSAKRRKAAANKEAEPKIEPDSRVFQEDSICGTPIYRTSMLTAKAKGPWI 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4081713 4082968 - Tan0002499.1 Tan01g0440 737864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0440 234 SUPERFAMILY DNA-binding domain 98 157 IPR016177 GO:0003677(InterPro)
Tan01g0440 234 SMART rav1_2 98 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0440 234 Pfam AP2 domain 98 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0440 234 ProSiteProfiles AP2/ERF domain profile. 98 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0440 234 FunFam Ethylene-responsive transcription factor 2 97 157 - -
Tan01g0440 234 CDD AP2 106 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0440 234 MobiDBLite consensus disorder prediction 190 205 - -
Tan01g0440 234 MobiDBLite consensus disorder prediction 185 205 - -
Tan01g0440 234 PANTHER DNA-BINDING DOMAIN 86 186 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan01g0440 234 Gene3D AP2/ERF domain 97 158 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0440 234 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0440 234 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0440 Tan-Chr1:4081713 Tan01g2079 Tan-Chr1:23845653 1.20E-41 dispersed
Tan01g0439 Tan-Chr1:4062090 Tan01g0440 Tan-Chr1:4081713 4.00E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26273 PF00847 AP2 3.00E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0440 K09286 - rcu:8289660 177.178