Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0445 ATGTTTCGATTTGTTTTCGGCATAAATGACGTGTACGGCCGCGATTTCTCCGCTGCGTCTCTGCCGGAATTCACCCTCAGCCACTTGACGGAACAAATCGACGACACGGCGATGTTCAGCTCCGACGAGTTTCGAATGTTCGCTTACAAGATCCAACGGTGTCCAAAAACCCGCAGCCACGACTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACCGCCGTGGCCTGCCCGGCCTTCCGGACGGGCATCTGCCCGAAGGGCGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTCCACCCGGCCCGGTATCGGACCCGGGCCTGTAATGCCGGCCGGTTTTGCCAACGGAAGGTTTGTTTTTTTGCTCACTCGCCGGAGCAGCTCCGCCCGGAGACCAAACAGAAGCTTCAGTTTAATGCGCATCGGCCGCCGCGTGAGGTGGTGGTAGCCTTCGAAGGTGCGGCGGCGAGGAAGAATGACGGCGTACCGGAAACTCCGGCGAGTGGGAACGGCGGCGAACGGGAAAATGAAGCGAGTTTTGGATTGGAGGTGTCGGATTTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGCGGTAA 651 57.91 MFRFVFGINDVYGRDFSAASLPEFTLSHLTEQIDDTAMFSSDEFRMFAYKIQRCPKTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGICPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEQLRPETKQKLQFNAHRPPREVVVAFEGAAARKNDGVPETPASGNGGERENEASFGLEVSDLELPHIEWISELLR 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4128067 4128717 - Tan0008095.1 Tan01g0445 737869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0445 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 108 IPR000571 GO:0046872(InterPro)
Tan01g0445 216 SMART c3hfinal6 83 109 IPR000571 GO:0046872(InterPro)
Tan01g0445 216 SMART c3hfinal6 118 141 IPR000571 GO:0046872(InterPro)
Tan01g0445 216 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872(InterPro)
Tan01g0445 216 Gene3D - 80 153 - -
Tan01g0445 216 PANTHER UNKEMPT FAMILY MEMBER 36 153 IPR045234 -
Tan01g0445 216 SUPERFAMILY CCCH zinc finger 83 113 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0445 Tan-Chr1:4128067 Tan02g0199 Tan-Chr2:1713933 9.40E-46 dispersed
Tan01g0445 Tan-Chr1:4128067 Tan01g4650 Tan-Chr1:112358561 2.70E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26274 PF00642 zf-CCCH 3.90E-06 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0445 - - - 0.0