Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0492 ATGGGTACAAGAACCCAGCAACCATGCCGTGAAGACGACGATGACGACCTCCCTGGTGGCCCTGCTGCCACTACGATTTCGGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCGACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGCACCTACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTCGCAGAATTTGCTGATCCTGGTAACAATCTTGCGTCACCAGATCAGCAACAGTACGATGAAAAAAATATCAGGCGAAGGGTATATGATGCCTTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAACGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGGGGCGTGTCTTTACCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTCGAGCTCCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAATGCGATAACACAGCACAAAATTTTACTCCTGATGCTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAATCACCCCAGATCCCTCTTCCTTCCATGTCTAACACGCCTGTTAGAACTCCAACCTCGCCACCACTTCCCGGAATTATAAAAGCTCGTGTCAAACACGAACATTGA 1044 47.51 MGTRTQQPCREDDDDDLPGGPAATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQAPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNNLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDAGEGSSMSGMYQSPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4533188 4541699 - Tan0013132.1 Tan01g0492 737916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0492 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Tan01g0492 347 MobiDBLite consensus disorder prediction 1 95 - -
Tan01g0492 347 SMART DP_2 182 345 IPR014889 -
Tan01g0492 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan01g0492 347 MobiDBLite consensus disorder prediction 23 60 - -
Tan01g0492 347 Coils Coil 191 225 - -
Tan01g0492 347 FunFam Transcription factor-like protein DPB 87 180 - -
Tan01g0492 347 Gene3D Transcription factor DP 181 313 IPR038168 -
Tan01g0492 347 Pfam Transcription factor DP 183 288 IPR014889 -
Tan01g0492 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan01g0492 347 FunFam Transcription factor-like protein DPB 181 306 - -
Tan01g0492 347 PIRSF Txn_factor_DP 5 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Tan01g0492 347 Gene3D - 88 180 IPR036388 -
Tan01g0492 347 PANTHER TRANSCRIPTION FACTOR DP 23 314 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Tan01g0492 347 SUPERFAMILY E2F-DP heterodimerization region 181 301 IPR037241 -
Tan01g0492 347 CDD DP_DD 180 283 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0492 K04683 - - csv:101216863 645.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0492 Tan-Chr1:4533188 Tan01g0494 Tan-Chr1:4533188 9.60E-133 dispersed
Tan01g0492 Tan-Chr1:4533188 Tan01g0493 Tan-Chr1:4533188 1.30E-193 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26278 PF08781 DP 3.20E-41 No_clan Tan TF