Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0493 ATGGGTACAAGAACCCAGCAACCATGCCGTGAAGACGACGATGACGACCTCCCTGGTGGCCCTGCTGCCACTACGATTTCGGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCGACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGCACCTACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTCGCAGAATTTGCTGATCCTGGTAACAATCTTGCGTCACCAGATCAGTACGATGAAAAAAATATCAGGCGAAGGGTATATGATGCCTTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAACGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGGGGCGTGTCTTTACCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTCGAGCTCCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAATGCGATAACACAGCACAAAATTTTACTCCTGATGCTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAATCACCCCAGATCCCTCTTCCTTCCATGTCTAACACGCCTGTTAGAACTCCAACCTCGCCACCACTTCCCGGAATTATAAAAGCTCGTGTCAAACACGAACATTGA 1038 47.5 MGTRTQQPCREDDDDDLPGGPAATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQAPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNNLASPDQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDAGEGSSMSGMYQSPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4533188 4541699 - Tan0013132.2 Tan01g0493 737917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0493 345 Gene3D - 88 178 IPR036388 -
Tan01g0493 345 MobiDBLite consensus disorder prediction 1 95 - -
Tan01g0493 345 Coils Coil 189 223 - -
Tan01g0493 345 FunFam Transcription factor-like protein DPB 87 178 - -
Tan01g0493 345 Pfam Transcription factor DP 181 286 IPR014889 -
Tan01g0493 345 Gene3D Transcription factor DP 179 311 IPR038168 -
Tan01g0493 345 SMART DP_2 180 343 IPR014889 -
Tan01g0493 345 SUPERFAMILY Winged helix DNA-binding domain 95 174 IPR036390 -
Tan01g0493 345 CDD DP_DD 178 281 IPR014889 -
Tan01g0493 345 MobiDBLite consensus disorder prediction 23 60 - -
Tan01g0493 345 SMART E2F_TDP_2 92 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan01g0493 345 PIRSF Txn_factor_DP 5 345 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Tan01g0493 345 FunFam Transcription factor-like protein DPB 179 304 - -
Tan01g0493 345 PANTHER TRANSCRIPTION FACTOR DP 23 312 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Tan01g0493 345 Pfam E2F/DP family winged-helix DNA-binding domain 95 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan01g0493 345 SUPERFAMILY E2F-DP heterodimerization region 179 299 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0492 Tan-Chr1:4533188 Tan01g0493 Tan-Chr1:4533188 1.30E-193 tandem
Tan01g0493 Tan-Chr1:4533188 Tan01g0494 Tan-Chr1:4533188 3.40E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26279 PF08781 DP 3.20E-41 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0493 K04683 - csv:101216863 637.106