Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0494 ATGGGTACAAGAACCCAGCAACCATGCCGTGAAGACGACGATGACGACCTCCCTGGTGGCCCTGCTGCCACTACGATTTCGGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCGACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGCACCTACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTCGCAGAATTTGCTGATCCTGGTAACAATCTTGCGTCACCAGATCAGCAACAGTACGATGAAAAAAATATCAGGCGAAGGGTATATGATGCCTTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAACGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGGGGCGTGTCTTTACCTTTCATCCTGGTGCAGGAAACAGTAACATTTCAATTGATAATATGA 762 47.64 MGTRTQQPCREDDDDDLPGGPAATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQAPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNNLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQETVTFQLII 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4533188 4541699 - Tan0013132.3 Tan01g0494 737918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0494 253 MobiDBLite consensus disorder prediction 1 95 - -
Tan01g0494 253 PANTHER TRANSCRIPTION FACTOR DP 23 244 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Tan01g0494 253 PIRSF Txn_factor_DP 5 249 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Tan01g0494 253 FunFam Transcription factor-like protein DPB 87 180 - -
Tan01g0494 253 Gene3D Transcription factor DP 181 248 IPR038168 -
Tan01g0494 253 Gene3D - 87 180 IPR036388 -
Tan01g0494 253 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan01g0494 253 MobiDBLite consensus disorder prediction 23 60 - -
Tan01g0494 253 Coils Coil 191 225 - -
Tan01g0494 253 SUPERFAMILY E2F-DP heterodimerization region 181 244 IPR037241 -
Tan01g0494 253 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Tan01g0494 253 Pfam Transcription factor DP 183 244 IPR014889 -
Tan01g0494 253 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan01g0494 253 SMART DP_2 182 253 IPR014889 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0492 Tan-Chr1:4533188 Tan01g0494 Tan-Chr1:4533188 9.60E-133 dispersed
Tan01g0493 Tan-Chr1:4533188 Tan01g0494 Tan-Chr1:4533188 3.40E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26280 PF02319 E2F_TDP 9.80E-21 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0494 K04683 - csv:101216863 440.269