Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0496 ATGTCGGTGATGTTGGGTTCTTCGTCTTCTCTGTGGATCATTTTGGCGCTCGGTTTTGTTTTGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAATCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATCCTACCCTTGTTAATCCCTGCACATGGTTCCATGTCACCTGTGACAGCGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCAGAGTTTACAGTATCTGGAGCTTTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGAAAAACTACGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACTATTCCAATGTCATTAACCACTGTTAAATCCCTGCAAGTCCTGGATCTTTCATTTAACCGCCTAACTGGAGATATTCCAGTCAATGGTTCTTTTTCACTTTTTACCCCTATCAGTTTTGCTAATAATAATCTTAATGAATCTGCCGTACGTACTCCACCACCTCCTTTACCTTCTTCACCAACCTCCGCATCAGGTAATACTGCCACTGGAGCTATTGCCGGTGGAGTTGCTGCTGCTGCTGCTTTATTGTTTGCTGCTCCTGCTGTTGCAGTTGCTCTGTGGCGTCGGAAGAAACCACAAGACCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTACGTGAACTACAAGTAGCAACAGATCATTTTAGCAACAAACATATTCTAGGTCGAGGTGGTTTTGGCAAGGTCTACAAGGGACGGCTGGCTGATGGATCTCTTGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGTGGCTTTTGTATGACACCAACCGAGCGGTTGTTGGTCTATCCATTTATGGTTAATGGAAGTGTAGCATCATGTTTAAGAGAACGTCCAGAATTACAGCCTCCACTTAATTGGTCGAATCGAAAACGCATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAACATTTTGCTTGACGAGGAGTTTGAAGCCGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTACAAAGATACTCATGTCACGACTGCAGTACGAGGAACAATTGGGCATATAGCACCTGAGTACCTTTCGACTGGAAAGTCTTCTGAGAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTAAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAACTATCCCGATGATGAAGTCGAGCAGCTTATACAAGTTGCCTTATTGTGCACACAAGGCACTCCTACGGAGCGGCCTAAAATGTCGGAGGTTGTACGGATGCTTGAGGGTGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGATTCCATCAAGAAGTAAGCCGCAATCCCCACCCAAGTAATACTTGGATTCTTGACTCCACTTCTGAAATGCCTCCTGATGAATTGTCTGGTCCGAGATGA 1839 45.02 MSVMLGSSSSLWIILALGFVLLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGQLQSLQYLELYSNNISGGIPEELGDLTNLVSLDLYLNNLTGHIPVTLGQLEKLRFLRLNNNSLSGTIPMSLTTVKSLQVLDLSFNRLTGDIPVNGSFSLFTPISFANNNLNESAVRTPPPPLPSSPTSASGNTATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERPELQPPLNWSNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGNYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQEVSRNPHPSNTWILDSTSEMPPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4562267 4577029 - Tan0004903.1 Tan01g0496 737920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0496 612 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Tan01g0496 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0496 612 Pfam Protein tyrosine and serine/threonine kinase 292 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0496 612 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Tan01g0496 612 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Tan01g0496 612 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
Tan01g0496 612 Gene3D Ribonuclease Inhibitor 25 206 IPR032675 -
Tan01g0496 612 SMART serkin_6 289 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0496 612 FunFam Somatic embryogenesis receptor-like kinase 1 366 583 - -
Tan01g0496 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524(InterPro)
Tan01g0496 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 611 - -
Tan01g0496 612 MobiDBLite consensus disorder prediction 579 612 - -
Tan01g0496 612 SUPERFAMILY L domain-like 27 202 - -
Tan01g0496 612 SUPERFAMILY Protein kinase-like (PK-like) 268 564 IPR011009 -
Tan01g0496 612 FunFam Somatic embryogenesis receptor kinase 1 258 365 - -
Tan01g0496 612 Pfam Leucine Rich Repeat 141 161 IPR001611 GO:0005515(InterPro)
Tan01g0496 612 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Tan01g0496 612 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Tan01g0496 612 Pfam Leucine Rich Repeat 165 182 IPR001611 GO:0005515(InterPro)
Tan01g0496 612 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0496 Tan-Chr1:4562267 Tan10g1711 Tan-Chr10:43391278 2.50E-221 dispersed
Tan02g1013 Tan-Chr2:14393467 Tan01g0496 Tan-Chr1:4562267 1.60E-29 dispersed
Tan02g1267 Tan-Chr2:33996046 Tan01g0496 Tan-Chr1:4562267 1.20E-30 dispersed
Tan01g0496 Tan-Chr1:4562267 Tan01g0498 Tan-Chr1:4601760 2.10E-255 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66991 PF00069 Pkinase 6.40E-44 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0496 K13416 - csv:101216389 1079.7