Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0497 ATGATGAAGCTGCAAACATATGCGGGAATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTTAACAGTAGAGGCCAGTTCTACCCAGCATTGGTCTATTTATCGACTTCCAAGATCAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACCAAAAAAATATTTCTTGGTTCTCTCCGAGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGGCAAGATTTTTCTGTTGCATTCCTTGGTATGGTTACGGCTTTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCATTGTTGTCTCACATCCGGATTGTTTCTTTCTTGGGTTTTCTCTTTGTTCTAGATAGTCTGTTTTTTTACAATTCGATAGAATCTCTGATACAGACAAGGAAGGCTTCAGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACGGCTGTGTCAACATTTGTGAAATATATTTTCTATGTGAGTGATGTACTCATGGAGGGACAATGGGAAAAGAAGCCTGTCTATACATTCTACTTGGAACTTATCCGAGACTTACTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGCGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAATGATCGTTTTCCAGACGCAACACCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCGAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCGCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGGAGGTCAGCAGGGATTGCAGTCCGATGCTAATCAACCAGGAACAGGAGCCACAAATTCATCTGCACAAGGCTCGAGTGGTACAAGTGCTGCTGGTGATAACTTGAGTCATCATCAGGCTAGAGTCCAAGCTGCTGCTGCTGCTGCTTCAATATATGAGAAATCTTATGTTTATCCTTTTGCGAACACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTCAGAGACCTTTGCCCGACTCCAACAATGTAGAACCGAATGGAGAACAAGCACAATATTTTCCATTTACAGGTGGCCCTGCAAACCTGACCTTCTCTCAAATTCCCCAAAATCTGTTTGTTCCTTTTCAGCCACGAGAGGGCACTGTAAACAATACGGATGGATTGGGCAGCAGCCAAGATATAACAGGTTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAAATTGAGATACTACAAGATCAGCTGCAACTTCTCCGTAAACCGAAAGTTGAGGCAAGCTCGAGAGCAGGCGAGGCAGATAAGAAAGGGAAAAGCGTAGCATCATCATCACCATCATCGTCTTCATCAGTTTCAGATTCTCATCCACCCGGAGAAATTGATAGGGTGGTGAGATAG 1656 42.51 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGQQGLQSDANQPGTGATNSSAQGSSGTSAAGDNLSHHQARVQAAAAAASIYEKSYVYPFANTLVWSPGYAVVPQVQRPLPDSNNVEPNGEQAQYFPFTGGPANLTFSQIPQNLFVPFQPREGTVNNTDGLGSSQDITGSQLEAQERFLQQQIEILQDQLQLLRKPKVEASSRAGEADKKGKSVASSSPSSSSSVSDSHPPGEIDRVVR 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4585370 4593890 - Tan0016243.1 Tan01g0497 737921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0497 551 SUPERFAMILY RING/U-box 272 336 - -
Tan01g0497 551 MobiDBLite consensus disorder prediction 340 378 - -
Tan01g0497 551 CDD RING-H2_synoviolin 289 330 - -
Tan01g0497 551 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Tan01g0497 551 Coils Coil 481 501 - -
Tan01g0497 551 SMART ring_2 292 329 IPR001841 -
Tan01g0497 551 Pfam Ring finger domain 291 330 IPR001841 -
Tan01g0497 551 MobiDBLite consensus disorder prediction 508 551 - -
Tan01g0497 551 PANTHER RING ZINC FINGER PROTEIN 2 337 IPR050731 -
Tan01g0497 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Tan01g0497 551 MobiDBLite consensus disorder prediction 525 541 - -
Tan01g0497 551 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0497 Tan-Chr1:4585370 Tan07g0312 Tan-Chr7:6518690 4.40E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0497 K10601 - csv:101215351 926.391