Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0498 ATGTCGTTAATATTGGGTTCTTCGTCTTCTCTGTGGATCATTTTGGTGCTCGGTTTTGTTTCGCTGATCTCTGCTAATATTGAAGGCGATGCTTTGATTGCATTGAAGTCAAATTTACTAGATCCCAATGGCGTACTGCAGAATTGGGATTCTTCGCTTGTTAATCCCTGCACATGGTTCCATGTCACCTGTGACAGTGGTAATGTCACTCGAGTTGATCTTGGAAATGCAAATCTAACTGGCACGTTAGTTCCACAGCTTGGCCAGCTTCAGAGTTTACAGTATCTGGAACTTTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGAGTTGACAAATTTGGAGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCCGTCAGATTTGGCCAGCTTAGAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCAGGAACTATTCCAATGTCATTAACTGCTGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAACCACCTAACTGGAGATATTCCTGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACAATCTTAATCAGTCTGCCGTACATACTCCACCACCTCCTTTACCTTCTTCACCAAGCCCCGCATCAGGTAATAGTGTCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCCGTTTTACTGTTTGCTGCTCCTACTGTTGCAGTTGCTCTCTGGCGTCGGAAGAAACCACAAGACAGTTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAGGTTCTCTCTGCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTAGGTAAAGGTGGTTTTGGCAAGGTCTACAAGGGACGGCTGGCTGATGGATCTCTTGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCTCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATTTGCTCCGCCTGCATGGCTTTTGTATGACACCGACTGAGCGGTTGCTGGTTTATCCATTTATGGTTAATGGAAGTCTAGCATCGTGTTTAAGAGAACGTTTAAAAACACAGCCTCCACTTAATTGGTTAAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGCAATCCTAAGATTATCCATCGTGATGTGAAAGCTGCAAACATTTTGCTTGATGAGGAGTTTGAAGCCGTCGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTAACAACTGTTGTACGTGGAACAATTGGGCATATAGCGCCAGAGTACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTGCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATAATGATGATGTCATGCTTCTTGACTGGGTGAAAGGACTTCTAAAAGACAAGAGGCTGGAAATACTAGTAGATCCCAATCTTGCGGGAGACTATCCTGATAACGAAGTCGAGCAGCTTATTCAAATTGCCTTGTTGTGCACACAAGGCACTCCTTCAGAGCGGCCTAAGATGTCGGGGATTGTACGGATGCTTGAGGGTGATGGTTTAGCTGATAGATGGGAAGAATGGCAGAACGAGGAGCGGTTCCATCAAGAAGTAAGCCACAATCCTCACCCAAATGCTACTTGGATTCTTGACTCTACTTCTGAAATGCCTCCTGATGAATTGTCTGGTCCAAGATGA 1836 44.01 MSLILGSSSSLWIILVLGFVSLISANIEGDALIALKSNLLDPNGVLQNWDSSLVNPCTWFHVTCDSGNVTRVDLGNANLTGTLVPQLGQLQSLQYLELYSNNISGGIPEELGELTNLESLDLYLNNLTGPIPVRFGQLRKLRFLRLNNNSLSGTIPMSLTAVKSLQVLDLSYNHLTGDIPVNGSFSLFTPISFAHNNLNQSAVHTPPPPLPSSPSPASGNSVTGAIAGGVAAAAVLLFAAPTVAVALWRRKKPQDSFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGKGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSLASCLRERLKTQPPLNWLNRKRIALGAARGLAYLHDHCNPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTVVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANNDDVMLLDWVKGLLKDKRLEILVDPNLAGDYPDNEVEQLIQIALLCTQGTPSERPKMSGIVRMLEGDGLADRWEEWQNEERFHQEVSHNPHPNATWILDSTSEMPPDELSGPR 611
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4601760 4612645 + Tan0016727.1 Tan01g0498 737922
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0498 611 Gene3D Ribonuclease Inhibitor 24 205 IPR032675 -
Tan01g0498 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Tan01g0498 611 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Tan01g0498 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Tan01g0498 611 SUPERFAMILY L domain-like 29 201 - -
Tan01g0498 611 Pfam Leucine Rich Repeat 164 181 IPR001611 GO:0005515(InterPro)
Tan01g0498 611 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Tan01g0498 611 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Tan01g0498 611 Pfam Leucine Rich Repeat 140 159 IPR001611 GO:0005515(InterPro)
Tan01g0498 611 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Tan01g0498 611 SUPERFAMILY Protein kinase-like (PK-like) 267 563 IPR011009 -
Tan01g0498 611 ProSiteProfiles Protein kinase domain profile. 288 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0498 611 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
Tan01g0498 611 SMART serkin_6 288 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0498 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 610 - -
Tan01g0498 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0498 611 MobiDBLite consensus disorder prediction 199 219 - -
Tan01g0498 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Tan01g0498 611 Pfam Protein tyrosine and serine/threonine kinase 291 562 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0498 611 MobiDBLite consensus disorder prediction 581 611 - -
Tan01g0498 611 FunFam Somatic embryogenesis receptor kinase 1 24 210 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0498 Tan-Chr1:4601760 Tan10g1711 Tan-Chr10:43391278 1.10E-219 dispersed
Tan01g0496 Tan-Chr1:4562267 Tan01g0498 Tan-Chr1:4601760 2.10E-255 proximal
Tan01g0498 Tan-Chr1:4601760 Tan01g0499 Tan-Chr1:4603783 8.60E-246 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66992 PF00069 Pkinase 1.50E-44 CL0016 Tan PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0498 K13416 - csv:101216389 1019.22