Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0513 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATCAATGCCCTGCCAGGTATGGCTTTAGCCTAGTAAAAGGAAAAGCAAACCATCCCATGGAAGATTATCATGTTGCTAAATTTATTACAGTGCATGGCCGGGAGCTTGGCCTTTTTGCTATATATGATGGACACCTAGGAGACAGCGTACCAGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCCGTAGCTCTATCTTTAAGGCATATGAGAAGACAGACCAAGCAATACTTTCGCACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAATAAACGGTCAAAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAAAAGAGGGCAGGAAGTACAAATGTCTATTGATCACGAACCAAACACTGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTGTCTAACATGCCAGGAGATGTCGCTAGAGTGAACGGTCAACTTGCAGTTTCTCGAGCGTTTGGTGACAAGAACCTCAAAACACACTTGCGATCTGATCCCGACATAAAGAATGCCGATATTGATTCTGACACCGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGACAAATCAAGAAGCCGTGGATATAGCAAGAAAGACCAAGGATCCCCAGAGGGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCGATCATCGTAGTTCGTTTCAAAGGGTAA 852 44.6 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNQCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKRGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADIDSDTELLILASDGLWKVMTNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4755466 4761687 + Tan0013235.1 Tan01g0513 737937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0513 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Tan01g0513 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Tan01g0513 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Tan01g0513 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Tan01g0513 283 PANTHER PROTEIN PHOSPHATASE 28 279 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g0513 283 CDD PP2Cc 34 281 IPR001932 -
Tan01g0513 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Tan01g0513 283 SMART PP2C_4 30 279 IPR001932 -
Tan01g0513 283 Gene3D - 30 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0513 Tan-Chr1:4755466 Tan01g3787 Tan-Chr1:102701702 3.10E-121 dispersed
Tan01g0513 Tan-Chr1:4755466 Tan02g0200 Tan-Chr2:1718196 3.00E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0513 K17506 - csv:101214223 549.28