Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0535 ATGGCCGGTCAATCAGATCCTTACCTGACCCTATTTTCTGCAGAAGAGGTTGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCTAAATTTGATTTGTGGGGATTATGGTCCGTTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGCCTCCAGAGTGGATGTCATGCGAAAATTTGACACAAATTTTGGAGGCAGAACGAGAGTCTCAAGGATCTTTCCAGATACTACCCTTCCATTATGTGGAGATATCAAAACTTCTTTTTGACCATGCACGAGATGACGTTCCTTCCATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGGAATGTTAGGTTTCACAAAGTTGAAATGAGCTTGGGGTCAATTGATACACGCACATCTGCAGTGAAGATTAAAGATCTATCTGCCATGGAAGTAAATATAGTTCGACCATTTGTCGGTAGAGCGTTGCAGGCAATTTACAAGCATGGAAATCCAGAGTTGGTCCCAGATCAAGAAAGGATGACTAATGTGCAGCCACAAGGACACGATCACGGACAAAGACGACCTCTTCGGAGACGGTAG 636 42.45 MAGQSDPYLTLFSAEEVEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPEWMSCENLTQILEAERESQGSFQILPFHYVEISKLLFDHARDDVPSMYLVRSLIEDIRNVRFHKVEMSLGSIDTRTSAVKIKDLSAMEVNIVRPFVGRALQAIYKHGNPELVPDQERMTNVQPQGHDHGQRRPLRRR 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5103715 5111177 + Tan0010218.1 Tan01g0535 737959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0535 211 PIRSF GINS_PSF2 2 211 IPR007257 GO:0005634(InterPro)|GO:0006260(InterPro)
Tan01g0535 211 Gene3D - 79 191 - -
Tan01g0535 211 FunFam DNA replication complex GINS protein PSF2 78 194 - -
Tan01g0535 211 SUPERFAMILY GINS helical bundle-like 73 182 IPR036224 -
Tan01g0535 211 MobiDBLite consensus disorder prediction 192 211 - -
Tan01g0535 211 CDD GINS_A_psf2 66 182 - -
Tan01g0535 211 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Tan01g0535 211 CDD GINS_B_Psf2 13 74 - -
Tan01g0535 211 Pfam GINS complex protein helical bundle domain 71 170 IPR021151 -
Tan01g0535 211 Gene3D - 12 77 - -
Tan01g0535 211 SUPERFAMILY PriA/YqbF domain 12 71 - -
Tan01g0535 211 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 1 198 IPR007257 GO:0000727(PANTHER)|GO:0000811(PANTHER)|GO:0005634(InterPro)|GO:0006260(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0535 K10733 - csv:101212053 385.956