Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0542 ATGACGAGACAAAAAATTCAAATAAAAAAAATAGACAACATAGCAGCAAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTCGCTACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTATTTGATTATTCTAGCTCAAGTATGCAGGAGTTGCTAAGAAGACATAACATGCTACCAGAGCTCAATAACTTTGTCCAACCTCCCTCTCAGCCTGAAAAGGGTGCCTATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAGAGGAGAAGAGCTTCAAGGATTGGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTTGAGACCAAGGATGAAAAGTTTCTAAAAGAGATTGGTGCTGGAAAGGAGAAGGAAGCTTTGCTGATGAAAGAGAATCAGAGACTAAGGAATCAAGTGAGAGCTTGTGGTTCTTCTCTTTTAGAGCAAGAACAAGCAGTGGTTGGTGGGAATTCTTCCTTGGGGTCAAAGTCAAACACCAGCAACAGCAGCTCCTCAGCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGGTTAGTAATTTTCTTACATACACTAAACACAAGACTTTTTTTTTAA 693 38.82 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMLPELNNFVQPPSQPEKGAYAKLTEEFAAKTKELRHMRGEELQGLGIEELKQLEKLLEIGLNRVVETKDEKFLKEIGAGKEKEALLMKENQRLRNQVRACGSSLLEQEQAVVGGNSSLGSKSNTSNSSSSANPNSQDYDDISLKLGLVIFLHTLNTRLFF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5157779 5167548 + Tan0008068.2 Tan01g0542 737966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0542 230 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 MobiDBLite consensus disorder prediction 184 205 - -
Tan01g0542 230 Pfam K-box region 87 167 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0542 230 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan01g0542 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 FunFam Transcription factor, MADS-box 13 83 - -
Tan01g0542 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g0542 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0542 230 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0542 230 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0542 Tan-Chr1:5157779 Tan01g0547 Tan-Chr1:5157779 5.80E-110 dispersed
Tan01g0541 Tan-Chr1:5157779 Tan01g0542 Tan-Chr1:5157779 7.10E-110 tandem
Tan01g0542 Tan-Chr1:5157779 Tan01g0543 Tan-Chr1:5157779 7.50E-118 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26282 PF01486 K-box 4.10E-15 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0542 - - - 0.0