Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g0560 | ATGGGAAGAGGGAAGATTGTGATTAGAAGGATTGATAATTCAACAAACAGACAAGTGACTTTTTCGAAGAGAAGAAGTGGATTACTGAAAAAAGCTCGAGAGCTATCAATTCTTTGTGATGCTGAAGTTGGATTGATCATTTTTTCAAGTACTGGAAAGCTCTATGATTATTCCAGCACCAGCATAAGATCGATTACTGATCGCTACAACAAGATGAAAGAGGAGCAAAATCAGCTGATGAACTCTGTTTCAGAACTTCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACAAAACTCAGACAGAAGGGAAATCATATGCATCAAGAAAATGTGGAACTCTACAAGAAGTTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTAGAGTTCCAAAACTCATTTTGA | 573 | 37.17 | MGRGKIVIRRIDNSTNRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSTSIRSITDRYNKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITKLRQKGNHMHQENVELYKKLDMIRKENAELQMKVEFQNSF | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5279281 | 5292046 | + | Tan0011075.3 | Tan01g0560 | 737984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g0560 | 190 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | Coils | Coil | 163 | 183 | - | - | |
Tan01g0560 | 190 | SUPERFAMILY | SRF-like | 2 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | Gene3D | - | 13 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Tan01g0560 | 190 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | Coils | Coil | 62 | 99 | - | - | |
Tan01g0560 | 190 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Tan01g0560 | 190 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 176 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan01g0560 | 190 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0560 | 190 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Tan01g0560 | 190 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0560 | Tan-Chr1:5279281 | Tan01g3872 | Tan-Chr1:103600486 | 6.50E-59 | dispersed | |
Tan01g0559 | Tan-Chr1:5279281 | Tan01g0560 | Tan-Chr1:5279281 | 5.40E-95 | tandem | |
Tan01g0560 | Tan-Chr1:5279281 | Tan01g0561 | Tan-Chr1:5283735 | 7.50E-55 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26286 | PF01486 | K-box | 4.30E-27 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g0560 | K09264 | - | csv:101203098 | 345.895 |