Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0560 ATGGGAAGAGGGAAGATTGTGATTAGAAGGATTGATAATTCAACAAACAGACAAGTGACTTTTTCGAAGAGAAGAAGTGGATTACTGAAAAAAGCTCGAGAGCTATCAATTCTTTGTGATGCTGAAGTTGGATTGATCATTTTTTCAAGTACTGGAAAGCTCTATGATTATTCCAGCACCAGCATAAGATCGATTACTGATCGCTACAACAAGATGAAAGAGGAGCAAAATCAGCTGATGAACTCTGTTTCAGAACTTCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACAAAACTCAGACAGAAGGGAAATCATATGCATCAAGAAAATGTGGAACTCTACAAGAAGTTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTAGAGTTCCAAAACTCATTTTGA 573 37.17 MGRGKIVIRRIDNSTNRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSTSIRSITDRYNKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITKLRQKGNHMHQENVELYKKLDMIRKENAELQMKVEFQNSF 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5279281 5292046 + Tan0011075.3 Tan01g0560 737984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0560 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 Coils Coil 163 183 - -
Tan01g0560 190 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0560 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 Coils Coil 62 99 - -
Tan01g0560 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Tan01g0560 190 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g0560 190 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0560 190 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan01g0560 190 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0560 Tan-Chr1:5279281 Tan01g3872 Tan-Chr1:103600486 6.50E-59 dispersed
Tan01g0559 Tan-Chr1:5279281 Tan01g0560 Tan-Chr1:5279281 5.40E-95 tandem
Tan01g0560 Tan-Chr1:5279281 Tan01g0561 Tan-Chr1:5283735 7.50E-55 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26286 PF01486 K-box 4.30E-27 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0560 K09264 - csv:101203098 345.895