Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g0599 | ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAACGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTTTGCGGTGCCGAAATTGCCATCATCGTCTTCTCGCCGGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGTGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCGCCGAGCTCCGGTACACTCCAACTGATTGAAGCTCACCGAAATGCCAATGTTCGAGAACTAAATGCTCAATTAACTCAGGTGTTGAATCAGTTGGAGATGGAACGGAAGCGTGGTGAAGAGTTGAACAAATTGCGAAAGGCTAGCCAGGCACAATGTTGGTGGGAACTTCCCATTGAAGAAATGGAAATGCATCAACTCGAACAACTTAAAGCATCATTGGATGAACTAAAGAAGAATGTTACACAACAAGCTGATCGAATTTTGATTCAAACCTCCAATGGCAATCCGCCACCTCAGTTCTTCCCGACCCCGACTCCGACTCCGACACCTACAAACCCGAATCAGCAAAGCAGCGTTTTCGTCGTCGATGCAAAGAACATGATCTCTCACCTTCCCTACAGCTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA | 672 | 49.26 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTPTPTNPNQQSSVFVVDAKNMISHLPYSYGSYGSRGFF | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5490800 | 5491907 | - | Tan0020373.1 | Tan01g0599 | 738023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g0599 | 223 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | Coils | Coil | 138 | 165 | - | - | |
Tan01g0599 | 223 | MobiDBLite | consensus disorder prediction | 176 | 190 | - | - | |
Tan01g0599 | 223 | Coils | Coil | 93 | 120 | - | - | |
Tan01g0599 | 223 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - | |
Tan01g0599 | 223 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | MobiDBLite | consensus disorder prediction | 169 | 195 | - | - | |
Tan01g0599 | 223 | Gene3D | - | 83 | 175 | - | - | |
Tan01g0599 | 223 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | PANTHER | MADS BOX PROTEIN | 6 | 157 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan01g0599 | 223 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g0599 | 223 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0599 | Tan-Chr1:5490800 | Tan06g2286 | Tan-Chr6:73893441 | 3.60E-32 | dispersed | |
Tan01g0599 | Tan-Chr1:5490800 | Tan03g2679 | Tan-Chr3:79767077 | 7.20E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26287 | PF00319 | SRF-TF | 3.60E-24 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g0599 | - | - | - | 0.0 |