Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0599 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAACGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTTTGCGGTGCCGAAATTGCCATCATCGTCTTCTCGCCGGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGTGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCGCCGAGCTCCGGTACACTCCAACTGATTGAAGCTCACCGAAATGCCAATGTTCGAGAACTAAATGCTCAATTAACTCAGGTGTTGAATCAGTTGGAGATGGAACGGAAGCGTGGTGAAGAGTTGAACAAATTGCGAAAGGCTAGCCAGGCACAATGTTGGTGGGAACTTCCCATTGAAGAAATGGAAATGCATCAACTCGAACAACTTAAAGCATCATTGGATGAACTAAAGAAGAATGTTACACAACAAGCTGATCGAATTTTGATTCAAACCTCCAATGGCAATCCGCCACCTCAGTTCTTCCCGACCCCGACTCCGACTCCGACACCTACAAACCCGAATCAGCAAAGCAGCGTTTTCGTCGTCGATGCAAAGAACATGATCTCTCACCTTCCCTACAGCTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 672 49.26 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTPTPTNPNQQSSVFVVDAKNMISHLPYSYGSYGSRGFF 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5490800 5491907 - Tan0020373.1 Tan01g0599 738023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0599 223 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 Coils Coil 138 165 - -
Tan01g0599 223 MobiDBLite consensus disorder prediction 176 190 - -
Tan01g0599 223 Coils Coil 93 120 - -
Tan01g0599 223 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Tan01g0599 223 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 MobiDBLite consensus disorder prediction 169 195 - -
Tan01g0599 223 Gene3D - 83 175 - -
Tan01g0599 223 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g0599 223 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0599 223 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0599 Tan-Chr1:5490800 Tan06g2286 Tan-Chr6:73893441 3.60E-32 dispersed
Tan01g0599 Tan-Chr1:5490800 Tan03g2679 Tan-Chr3:79767077 7.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26287 PF00319 SRF-TF 3.60E-24 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0599 - - - 0.0