Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0621 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAACAGCCCTAAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACAAAAGAGATTGCATGCTCCTAAAAAAGATGAGAGTATTGTGTCTCAAAGCGTTGCTGTCCAAAGTGAAGATGAATTGCCAGAACCTAAGTCTGTTTCCCTTTCCTTGGATATCAAGCAGATAGCTGGTCCAAAGCGATCAAATGTAAGAAAAGAAGAGGAAGATGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCACAGGTTAGACAATCTTATAATTGAGGCAATATCTACCTTGAGAGAACGTAGTGGCTCTATTAAGACAAGCATTGCTTCATATATAAAGGATCAATACTGGGCTCCTCCAGACTTCAAGAGGCTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGGAGATATAGGCTTGCTCCAACGGTGTCTTCATCAGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCATCATAGAGCTTCTATAAGATCTGACAGAGATGAAATGTGTACTCTTGCCAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCTGCCGCTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGATGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCAGAAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAGGGAAGAAATCTCCCAAAGATGCAGATGATCCCGGTTTGA 975 43.69 MGAPKQKWTNQEETALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLAQKRLHAPKKDESIVSQSVAVQSEDELPEPKSVSLSLDIKQIAGPKRSNVRKEEEDEEEEEKEVERIERDARYDCHRLDNLIIEAISTLRERSGSIKTSIASYIKDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLAPTVSSSERRGSMLLLDDHHRASIRSDRDEMCTLAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIADAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMQMIPV 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5769829 5783559 + Tan0004549.1 Tan01g0621 738045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0621 324 Gene3D - 8 93 - -
Tan01g0621 324 Pfam linker histone H1 and H5 family 150 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan01g0621 324 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan01g0621 324 Coils Coil 266 303 - -
Tan01g0621 324 SMART h15plus2 142 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan01g0621 324 MobiDBLite consensus disorder prediction 117 136 - -
Tan01g0621 324 SUPERFAMILY Winged helix DNA-binding domain 145 220 IPR036390 -
Tan01g0621 324 CDD SANT_TRF 6 56 - -
Tan01g0621 324 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tan01g0621 324 SUPERFAMILY Homeodomain-like 2 74 IPR009057 -
Tan01g0621 324 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tan01g0621 324 FunFam Telomere repeat-binding factor 1 8 85 - -
Tan01g0621 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Tan01g0621 324 Coils Coil 118 141 - -
Tan01g0621 324 Gene3D - 145 221 IPR036388 -
Tan01g0621 324 FunFam Telomere repeat-binding factor 1 2 58 - -
Tan01g0621 324 MobiDBLite consensus disorder prediction 75 98 - -
Tan01g0621 324 SMART sant 4 59 IPR001005 -
Tan01g0621 324 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0621 Tan-Chr1:5769829 Tan03g1679 Tan-Chr3:72789948 2.20E-59 dispersed
Tan01g0621 Tan-Chr1:5769829 Tan01g0622 Tan-Chr1:5769829 4.90E-147 tandem
Tan01g0621 Tan-Chr1:5769829 Tan03g1678 Tan-Chr3:72789948 2.20E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26288 PF00538 Linker_histone 3.70E-09 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0621 K09422 - csv:101218411 447.203