Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0622 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAACAGCCCTAAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACAAAAGAGATTGCATGCTCCTAAAAAAGATGAGAGTATTGTGTCTCAAAGCGTTGCTGTCCAAAGTGAAGATGAATTGCCAGAACCTAAGTCTGTTTCCCTTTCCTTGGATATCAAGCAGATAGCTGGTCCAAAGCGATCAAATGTAAGAAAAGAAGAGGAAGATGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCACAGGTTAGACAATCTTATAATTGAGGCAATATCTACCTTGAGAGAACGTAGTGGCTCTATTAAGACAAGCATTGCTTCATATATAAAGGATCAATACTGGGCTCCTCCAGACTTCAAGAGGCTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGGAGATATAGGCTTGCTCCAACGGTGTCTTCATCAGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCATCATAGAGCTTCTATAAGATCTGACAGAGATGAAATGTGTACTCTTGCCAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCTGCCGCTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGATGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCAGAAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAGGGAAGAAATCTCCCAAAGATGATGATCCCGGTTTGA 972 43.62 MGAPKQKWTNQEETALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLAQKRLHAPKKDESIVSQSVAVQSEDELPEPKSVSLSLDIKQIAGPKRSNVRKEEEDEEEEEKEVERIERDARYDCHRLDNLIIEAISTLRERSGSIKTSIASYIKDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLAPTVSSSERRGSMLLLDDHHRASIRSDRDEMCTLAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIADAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIPV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5769829 5783559 + Tan0004549.2 Tan01g0622 738046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0622 323 Gene3D - 8 93 - -
Tan01g0622 323 SUPERFAMILY Homeodomain-like 2 74 IPR009057 -
Tan01g0622 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan01g0622 323 Coils Coil 266 303 - -
Tan01g0622 323 SMART h15plus2 142 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan01g0622 323 MobiDBLite consensus disorder prediction 117 136 - -
Tan01g0622 323 Pfam linker histone H1 and H5 family 150 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan01g0622 323 SUPERFAMILY Winged helix DNA-binding domain 145 220 IPR036390 -
Tan01g0622 323 CDD SANT_TRF 6 56 - -
Tan01g0622 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tan01g0622 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
Tan01g0622 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tan01g0622 323 MobiDBLite consensus disorder prediction 74 98 - -
Tan01g0622 323 FunFam Telomere repeat-binding factor 1 8 85 - -
Tan01g0622 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Tan01g0622 323 Coils Coil 118 141 - -
Tan01g0622 323 FunFam Telomere repeat-binding factor 1 2 58 - -
Tan01g0622 323 Gene3D - 145 221 IPR036388 -
Tan01g0622 323 SMART sant 4 59 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0622 K09422 - - csv:101218411 441.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0622 Tan-Chr1:5769829 Tan03g1678 Tan-Chr3:72789948 2.20E-59 dispersed
Tan01g0621 Tan-Chr1:5769829 Tan01g0622 Tan-Chr1:5769829 4.90E-147 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g0622 . 1 321 Single Myb Histone (SMH) Gene Family AT1G49950 58.4 1.2e-70 264.2
Tan01g0621 . 1 321 Single Myb Histone (SMH) Gene Family AT1G49950 57.8 1.0e-69 261.2
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.4 2.2e-61 233.4
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.4 2.2e-61 233.4
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.3e-65 245.7
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.3e-65 245.7
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Tan04g2776 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 1.3e-69 260.8
Tan04g2777 . 1 265 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.2e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26289 PF00538 Linker_histone 3.70E-09 CL0123 Tan TF