Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0640 ATGGAACCTATAGGAGCCATTTCAGAAAGAGAATGGATCTCTCTCAGTGGAACATATACAGCTGAGGAATCTGATTTCATGGCTAATTTGCTCAATAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTGAGCTTGGAAATCCCATCTGCTTATTGGGCTGCAGCCAATGAACCACCATCATTGACCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATTTGTATGGCCTTCCACAAGGCAACAACAACAACCATCATTACACCTTGAGTGATTCCCACCCTCTTTGGTTGCCCAATGGTACCTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCGGGAAAGCCGACTCCGCTCGCTTTGACGACAACGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATCCCCTGCTGACCCTGTTGCTGTAGCTGTTGTCGATGGGAAAAGCTCACAACTTAAAAGGAAACCCGAGGTGACAGCGGAGGAAGAAGCTATGGGAGACGAGAAAGTTTCACCGATGTCGGTCGACGAAAACTCAAAGAAGCGATCCCACAGTTCGCTTGATGTCGAAAAGTCGAAGAGGAGCACGAAGACACGGAAGATCCCAAAGCTTGCTTTGCCTAGCTGCAATGAAGAGGATCACATTATTAGTCCAAATGGGCAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAGGCTCAAGAAATCAATGGTGGAATCACTTCAAGCTCAAACTCAAAAGGGTCTGCAACTTTGACCTCAAATGGAAAGCCAAGAGCCAGTAGAGGTTCAGCCACAGACCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATCTTACAAAGCCTCGTCCCGAATGGTACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGTTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAATAG 1098 44.17 MEPIGAISEREWISLSGTYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWAAANEPPSLTMAAMDEPSYYSSDASDSSNLYGLPQGNNNNHHYTLSDSHPLWLPNGTSLSLDFSMEDVGKADSARFDDNGSSRKTRQCRLQQSPADPVAVAVVDGKSSQLKRKPEVTAEEEAMGDEKVSPMSVDENSKKRSHSSLDVEKSKRSTKTRKIPKLALPSCNEEDHIISPNGQCTSSFSSEDDCNEAQEINGGITSSSNSKGSATLTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6143738 6145240 - Tan0019658.1 Tan01g0640 738064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0640 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983(InterPro)
Tan01g0640 365 MobiDBLite consensus disorder prediction 225 281 - -
Tan01g0640 365 MobiDBLite consensus disorder prediction 161 206 - -
Tan01g0640 365 CDD bHLH_AtIND_like 278 340 - -
Tan01g0640 365 Pfam Helix-loop-helix DNA-binding domain 287 327 IPR011598 GO:0046983(InterPro)
Tan01g0640 365 Gene3D - 279 335 IPR036638 GO:0046983(InterPro)
Tan01g0640 365 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 349 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan01g0640 365 MobiDBLite consensus disorder prediction 126 287 - -
Tan01g0640 365 SMART finulus 283 332 IPR011598 GO:0046983(InterPro)
Tan01g0640 365 FunFam Basic helix-loop-helix transcription factor 278 335 - -
Tan01g0640 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 342 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0640 Tan-Chr1:6143738 Tan11g1396 Tan-Chr11:12413439 2.80E-18 dispersed
Tan01g0640 Tan-Chr1:6143738 Tan01g4705 Tan-Chr1:112934162 1.20E-37 wgd
Tan01g0640 Tan-Chr1:6143738 Tan02g1741 Tan-Chr2:81174060 9.30E-38 wgd
Tan01g0640 Tan-Chr1:6143738 Tan02g1022 Tan-Chr2:14677850 2.90E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26290 PF00010 HLH 7.80E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0640 - - - 0.0