Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0686 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCGGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAACTGGGTCAGGTGGTGTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCGCAAGATGCTGCGAGAGCATTAGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTCATGTATTCTCACCGTGATCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCGTTTGGTAGTATCCTGTCTTGCAAGGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTTTGAAAGCAATTGAGAAGTTGAACGGTATGCTGTTGAATGACAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGACAAGTCCAAATTTAACAATGTATTTGTTAAGAATCTTTCTGAGACAACTACTGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCGAAATGCTTTGGATTTGTGAATTTTGAAAGTGCTGATGATGCTGCTAGGGCAGTTGATGCCCTTAATGGAAAGGTATTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGTCAAACTTGTACATTAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGGTGTTTACTCCATTTGGCACTATCACCTCGTGCAAGGTCATGCGGGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGATTGTTAGCAAACCATTGTATGTAGCACTTGCACAGAGAAAAGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATATCCCCCTGGTGGTCCAGGTATCGGACAGCAACTGTTTTATGGTCAAGGTCCTCCGGCAATGATTCCTTCCCAAGGCGGCTTTGGTTATCAGCAGCAGCTTGTTCCAGGTATAAGGCCTGGTGGAGGTCCAATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCCGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCGGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGTGGCATGCCGCTGCGTGATGCAGCACTCTCCTCTCAACCCATCCCTATAGGTGCTCTGGCATCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAACGCTGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAATCCCCGGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCCGCAGCTCAGCAGCAGCAAGCTGCCAATGCAGCTGATCAGCTAGCTTCTCTGTCGCTGACCGACAACCTCGTGTCGTGA 1965 46.51 MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSSVDKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKVFDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGSNLYIKNLDDSISDDKLKEVFTPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAALSSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAANAADQLASLSLTDNLVS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6535752 6540596 + Tan0004059.1 Tan01g0686 738110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0686 654 SMART rrm2_1 209 281 IPR003954 GO:0003676(InterPro)
Tan01g0686 654 SMART rrm2_1 30 103 IPR003954 GO:0003676(InterPro)
Tan01g0686 654 SMART rrm2_1 118 190 IPR003954 GO:0003676(InterPro)
Tan01g0686 654 SMART rrm2_1 312 384 IPR003954 GO:0003676(InterPro)
Tan01g0686 654 FunFam Polyadenylate-binding protein 15 114 - -
Tan01g0686 654 Gene3D - 293 397 IPR012677 -
Tan01g0686 654 SUPERFAMILY PABC (PABP) domain 495 646 IPR036053 GO:0003723(InterPro)
Tan01g0686 654 PANTHER RNA BINDING PROTEIN 24 210 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Tan01g0686 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723(InterPro)
Tan01g0686 654 Gene3D - 549 630 - -
Tan01g0686 654 Pfam RNA recognition motif 31 101 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 Pfam RNA recognition motif 119 187 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 Pfam RNA recognition motif 210 278 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 Pfam RNA recognition motif 313 381 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 FunFam Polyadenylate-binding protein 115 198 - -
Tan01g0686 654 Gene3D - 1 117 IPR012677 -
Tan01g0686 654 Gene3D - 198 292 IPR012677 -
Tan01g0686 654 FunFam Polyadenylate-binding protein 549 632 - -
Tan01g0686 654 CDD RRM1_I_PABPs 30 109 IPR034364 -
Tan01g0686 654 MobiDBLite consensus disorder prediction 473 494 - -
Tan01g0686 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 SMART rrm1_1 30 103 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 SMART rrm1_1 312 384 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 SMART rrm1_1 209 281 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 SMART rrm1_1 118 190 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723(InterPro)
Tan01g0686 654 CDD RRM2_I_PABPs 115 191 IPR045305 -
Tan01g0686 654 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676(InterPro)
Tan01g0686 654 Gene3D - 118 197 IPR012677 -
Tan01g0686 654 CDD RRM4_I_PABPs 310 388 - -
Tan01g0686 654 SMART poly_2 565 628 IPR002004 GO:0003723(InterPro)
Tan01g0686 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723(InterPro)
Tan01g0686 654 Pfam Poly-adenylate binding protein, unique domain 560 625 IPR002004 GO:0003723(InterPro)
Tan01g0686 654 FunFam Polyadenylate-binding protein 294 399 - -
Tan01g0686 654 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676(InterPro)
Tan01g0686 654 FunFam Polyadenylate-binding protein 199 293 - -
Tan01g0686 654 Coils Coil 622 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0686 Tan-Chr1:6535752 Tan11g1085 Tan-Chr11:8607392 2.70E-189 dispersed
Tan04g2316 Tan-Chr4:81409023 Tan01g0686 Tan-Chr1:6535752 5.60E-11 transposed
Tan01g0686 Tan-Chr1:6535752 Tan02g0926 Tan-Chr2:10989986 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0686 K13126 - csv:101219802 1168.3