Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0691 ATGCCTGGAAGTGTTGTTGTTGAACCCTTGGATTTGAGCCTGCAGATTCCTTACCATTTCAGGTGCCCGATTTCTCTCGAGCTTATGTGCGACCCGGTTACGGTTAGCACCGGCCAGACCTACGACCGTTCTAGTATTGAGTCATGGGTGGCCACCGGCAACACCACGTGCCCAGTCACTAGGGCTCCGCTCACCGACTTCACGCTCATCCCTAACCATACGCTGCGACGTCTCATCCAGGACTGGTGCGTTGCGAACCGGTCTTATGGTATTGAGCGGATTCCGACGCCGAAGCAACCGGCGGATCCGTCTTTGGTTCGGTCTCTGCTTGGCCAGGCTTCGTCGAAGTCGAGTGGTTCCAGTTCGAGAATCTCGGCGCTGCGGCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCGGTGATTTCTTCTCTCAATGCTCGTGAAATTCTTCTTGATATTGTGTTTTCGAATTTGGATTCGGATTCGGATTCTGTTTCCCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAGTCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTAGTTACCTGTCACATCTTCTGTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCGGCGTTGATTGAAATTGTGATTGCTGGAACTCGAGCGTCGGAGCTTCGAGGACAAATTTGCGCTATCGATGAATTGTTCGAAGGCGTGGTTGAAATCCTCAGAGATCCAACCGCGTATCCGCGAGCGCTCAAGGTCGGAGTTAAGGCCTTATTCGCTCTCTGTTTGGTGAAACAGACGAGGCACAAGGCGGTTTCCGCCGGTGCCGCCGAGATTCTCATCGACCGATTCCCCGATTTGGAGAAATACGACGCGGAACGAGCCTTAGCGACGATCGAACTCATTTGCAGAATTCCGACTGGTTGCGACGCGTTTGCCGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCGGACAGAGCGACGGAATCAGCGGTCGGAGCTCTGGTGTCGCTGTGCTCGGCGTCGGAGGAGAATCGACGGGAATCGGCGGCGGCGGGGATCTTTACACAGTTGTTGTTGCTGGTGCAAAGCGATTGTACGGACCGAGTTAAACGGAAATCGCAGGTGCTGCTGAAGCTTCTTCGAGATTCATGGCCGCAAGATTCCGTCGGAAATTCGGACGACTATGCTTGCAGTGAAATTGTGGTACCGTTTTGTTAA 1272 53.46 MPGSVVVEPLDLSLQIPYHFRCPISLELMCDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGIERIPTPKQPADPSLVRSLLGQASSKSSGSSSRISALRRLKGLARDSDKNRSVISSLNAREILLDIVFSNLDSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRISYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEILIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRRESAAAGIFTQLLLLVQSDCTDRVKRKSQVLLKLLRDSWPQDSVGNSDDYACSEIVVPFC 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6631457 6633803 - Tan0009880.1 Tan01g0691 738115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0691 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 90 IPR013083 -
Tan01g0691 423 Gene3D - 299 399 IPR011989 -
Tan01g0691 423 Gene3D - 91 295 IPR011989 -
Tan01g0691 423 CDD RING-Ubox_PUB 17 69 IPR045210 -
Tan01g0691 423 SUPERFAMILY ARM repeat 106 398 IPR016024 -
Tan01g0691 423 SMART Ubox_2 19 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g0691 423 SUPERFAMILY RING/U-box 13 92 - -
Tan01g0691 423 Pfam U-box domain 16 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g0691 423 PANTHER WDSAM1 PROTEIN 14 405 IPR045185 GO:0061630(InterPro)
Tan01g0691 423 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g0691 423 FunFam RING-type E3 ubiquitin transferase 10 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0691 Tan-Chr1:6631457 Tan04g2057 Tan-Chr4:74651170 6.80E-56 dispersed
Tan01g0691 Tan-Chr1:6631457 Tan08g1621 Tan-Chr8:65799506 1.00E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0691 - - - 0.0