Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0772 ATGATTTTCCATAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCGACAATCCCATTTGAGACAATTGGATACCTTTTTACTGGCAAATATGATTGTGGTCTCCCTTTTGCCCTCCTGGGTTTGCTCAGATTTTGGCGACTGCGACGTGTCAAGCAATTTTTCACTAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTTCTATCTGTGACTTTGTTTTATGTCCATTGTGCCGGATGCCTCTACTACTTGTTGGCTGACCGATATCCAAATGAAGGACAGACCTGGATCGGAACTGCGATTCCGAATTTTAAAGAGATTAGCCTTGGAGTGAGATATATTTCAGCCTTGTATTGGTCTATCACCACAATGACGACTGTTGGTTATGGTGATCTTCATGCTCAGAACACCGTAGAGATGATCTTCATCATTTTCTACATGCTCTTCAATCTTGGCTTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGCCGCACGATGGAATTTAGAAACAACATTGAAATGGCGTCAAATTTTGTTAACCGAAACCGCCTCCCTTCGAGGTTGAAGGAACACATATTGGCATACATGTGTTTGAGATTCAAGGCCGAGAGCCTAAACCAACAACATCTGATTGAACAGCTTCCAAAGTCGATTTGCAAAAACATCTGTCAGCAATTGTTTTTGCCAACTGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGCGCTGCTGGTAGCAAAGATGAAGGCCGAGTATATACCTCCTAAGGAGGACGTGATAATACATAACGAAACTCCCGATGAAGTTTATATCATTGTGTCCGGGGAAATTGAAATTATTGACTGTGATAGGGAGGTGGAGCAGATTGTTGGGACGTTACATTGTGGCAGTATGTTTGGAGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAGGCTAAAAACAAGTGTACTGCAAGAAGCTATGCATGTCAGGCAAGAAGACAATATGACCATTGTCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAGAATCACCATAGAAGGTTCGCCTGAAAAAGAGGCACCGGTGTTGAGTGAAGAAAAGGATCAAAGTTTCAACTGGAAGCACTCCATCGAATTAGATTTTGCTAGAGTGAACATATACAAAGGACATCCAGTAGCCAGAAAACTGGCTTCTTGTGAAGATCCTGGAAAGCTGATCAGATTGCCACATTCAATGGAGGACCTCAAAAAAGTTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTATTTTGGCAAATGAAGAAGGCTCTGAAATTGATTCCGTTGATGTGATAAGGGATAACGATAAGCTTTTTTTCATAGTTGCAGATGATAAATTTCTGTAA 1470 41.5 MIFHRYLSTWFLMDLASTIPFETIGYLFTGKYDCGLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYLLADRYPNEGQTWIGTAIPNFKEISLGVRYISALYWSITTMTTVGYGDLHAQNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNNIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEQLPKSICKNICQQLFLPTVEKVYLFKGVSKETLALLVAKMKAEYIPPKEDVIIHNETPDEVYIIVSGEIEIIDCDREVEQIVGTLHCGSMFGEVGALCCKNQNFTYRTKTLSQLLRLKTSVLQEAMHVRQEDNMTIVKNFLQERELSHRITIEGSPEKEAPVLSEEKDQSFNWKHSIELDFARVNIYKGHPVARKLASCEDPGKLIRLPHSMEDLKKVAGEKFGFDARNAILANEEGSEIDSVDVIRDNDKLFFIVADDKFL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7356834 7365315 + Tan0011665.2 Tan01g0772 738196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0772 489 Pfam KHA, dimerisation domain of potassium ion channel 410 481 IPR021789 -
Tan01g0772 489 Gene3D - 3 174 - -
Tan01g0772 489 Pfam Cyclic nucleotide-binding domain 274 353 IPR000595 -
Tan01g0772 489 ProSiteProfiles cAMP/cGMP binding motif profile. 251 370 IPR000595 -
Tan01g0772 489 Pfam Ion transport protein 4 180 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g0772 489 SUPERFAMILY cAMP-binding domain-like 178 368 IPR018490 -
Tan01g0772 489 FunFam Potassium channel KAT2 239 374 - -
Tan01g0772 489 SUPERFAMILY Voltage-gated potassium channels 44 211 - -
Tan01g0772 489 FunFam Potassium channel KAT3 1 175 - -
Tan01g0772 489 ProSiteProfiles KHA domain profile. 410 489 IPR021789 -
Tan01g0772 489 SMART cnmp_10 251 368 IPR000595 -
Tan01g0772 489 CDD CAP_ED 251 354 IPR000595 -
Tan01g0772 489 PANTHER POTASSIUM CHANNEL AKT1 2 377 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Tan01g0772 489 PRINTS EAG/ELK/ERG potassium channel family signature 121 138 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g0772 489 PRINTS EAG/ELK/ERG potassium channel family signature 147 158 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g0772 489 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g0772 489 Gene3D Jelly Rolls 218 389 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0772 Tan-Chr1:7356834 Tan05g2590 Tan-Chr5:77227450 1.40E-118 dispersed
Tan01g0771 Tan-Chr1:7356834 Tan01g0772 Tan-Chr1:7356834 3.20E-283 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0772 K21867 - csv:101205212 884.404