Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0786 ATGGAGTCGACCAAATCCTCCGCCTTAAACATGGAGGCACAGACTTGTTGGTCCTCCGACGAAGGCCTCAGAAGCCTAAGCTTTTATTCTTGTGCCGCTAGATTTGATTCAGAGGAGAGGGTTCGGAGAAGACGCAAAACGAAGAACACGTCGAAAGAAGATATCGAGAAGAGTTTTCACGATAATCGCACAATTGAGAGTCTCTTTGAGGAGGATTTCGTGGAGAGGCTTCGCAACAGAATCAAAATCGAGAGTCTATTAGAGAATGGTACGGAGCCAAGATTTCATTTCGAAGATTCTGAAAGATACTTGCCAAGTGAAGAATTGGGAATAATTGTTCGAAGTGGCCAAGCAAGGATGGCGGAGACGATGTGGGAAGAAAGCGTGATCCGCCTTGCGCCACTGTACAGAGCGGCCCTAATGGGTGAATGGGAGGTTGCAGAAGCCATTTTCAACGAAGATTTTGGAGCAATCACGTCTGAGATCACCCTCTTGAACGAGACTGCTCTCCATGTAGCGGTCGGCACAGGCCACAATTTGGGATTTGTTGAAAAGCTTGTGAACCTTATGTGTAAACGGTCCGTACCTCTTACACGGGAAGATTTAAATGGAAATACTGCACTTGCTGTTGCCGCCATTGTTGGGAATGTTAAAGCTGCGGAAATCTTAGTTGGGAAAAATGAGATGCTGCCTGCAATTAGAAATAAGGTCAATTACTCACCCCTTCATCTCGCGGCCAAATATGGGCACAGGGACATGATTTTGTATCTTCTATCGGTAACCAAGGATGAAGGGGTGTTTACGGGTAAAGCTGGTGCTAGGCTTCTCAATCTTCTCATTACATTTGATATCTATGATGTAGCTCTTGATATATTAAATCGGCAGCCAAAGTTGGCGGTCGAACGAGATCAATATGGGGTCACTGCTCTTGAAATGTTGGCTGAAAAACCAGATGTGTTTGTTGAGAGCGGAACACAGCTTGGGTTTTGGGGACGCTTACTTAGTCGTCGCTGCCGCGTCGCTGTAGAAGTACTTGATGCTCCTCTTCCCATGCAACAAAGTGATGTCGAAAGCCCTCCTGAAATCTCGAGGAATGCAGTGACAGCACCCTTCACCAAGAATGCTCATGACACAAAGCATATGCATGTGGAAGCATGTAAGTTGGTTAGACGCTTGTGTGAAGAAGCCCTGAACGTGGGAGGAAAGAAATGTGCAAACTTATTTTCAACTTCAATACTTTCAGCTGCAAAAATGGGGAAGCTTGTACCATCTGATAGAATCTCTGGTGCAGCTTTACAAATGCAACGGGAACTGCAATGGTTTAAGGAAGTTGAAAGATTAGTCCTACCCTCTTACAAAAGCATGAGAAACAAAGAAGACAAAACACCAAGAATGGTATTTAGTGATGAGCATGAAGGGCTAGTTCACCAAGGTGAGAAATGGATGAAGAACACTGCTTCATCATACACAGTTGTTGCAGCACTTGTTGCGACGGTTGCATTCACAGCGATTTTCACTGTTCCTGGTGGCTACAGCAGTGATCAAGGCATCCCCATTCTGATACACCACAAAATTTTCATGGTTTTTGTAGCAGCAGACGCATTAGCATTAATCACTTCATCTGCCTCAGTAATGATGTTTATGGCAATTCTCACTTCGCGCTATTCAGAAGATGATTTTCTTAAGGTATTGCCTACAAGATTGATTATCGGCCTCGTCTCGTTATTCATCTCTATATCATCCATGGTGGCTGCCTTCAGTGCATCTCTTTATCTAGTTCTTGTTCATCAAATGAAATGGGTGTGGGCTCCAATAATAGTATTTGCCTTCGTACCTGTTATCTTATTTGCAGTGTTGCAGTTTCCTCTTTTGGTGCAAATCACTTCTTCCACATATGGGGGCAGTATTTTTGGCTTGCAGAGTAAGGAAATAATTCATTAG 1941 44.1 MESTKSSALNMEAQTCWSSDEGLRSLSFYSCAARFDSEERVRRRRKTKNTSKEDIEKSFHDNRTIESLFEEDFVERLRNRIKIESLLENGTEPRFHFEDSERYLPSEELGIIVRSGQARMAETMWEESVIRLAPLYRAALMGEWEVAEAIFNEDFGAITSEITLLNETALHVAVGTGHNLGFVEKLVNLMCKRSVPLTREDLNGNTALAVAAIVGNVKAAEILVGKNEMLPAIRNKVNYSPLHLAAKYGHRDMILYLLSVTKDEGVFTGKAGARLLNLLITFDIYDVALDILNRQPKLAVERDQYGVTALEMLAEKPDVFVESGTQLGFWGRLLSRRCRVAVEVLDAPLPMQQSDVESPPEISRNAVTAPFTKNAHDTKHMHVEACKLVRRLCEEALNVGGKKCANLFSTSILSAAKMGKLVPSDRISGAALQMQRELQWFKEVERLVLPSYKSMRNKEDKTPRMVFSDEHEGLVHQGEKWMKNTASSYTVVAALVATVAFTAIFTVPGGYSSDQGIPILIHHKIFMVFVAADALALITSSASVMMFMAILTSRYSEDDFLKVLPTRLIIGLVSLFISISSMVAAFSASLYLVLVHQMKWVWAPIIVFAFVPVILFAVLQFPLLVQITSSTYGGSIFGLQSKEIIH 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7496048 7500773 + Tan0007360.2 Tan01g0786 738210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0786 646 ProSiteProfiles Ankyrin repeat region circular profile. 237 259 - -
Tan01g0786 646 ProSiteProfiles Ankyrin repeat profile. 237 259 IPR002110 GO:0005515(InterPro)
Tan01g0786 646 SMART ANK_2a 237 266 IPR002110 GO:0005515(InterPro)
Tan01g0786 646 SMART ANK_2a 203 232 IPR002110 GO:0005515(InterPro)
Tan01g0786 646 SMART ANK_2a 165 195 IPR002110 GO:0005515(InterPro)
Tan01g0786 646 Pfam Ankyrin repeats (3 copies) 186 259 IPR002110 GO:0005515(InterPro)
Tan01g0786 646 PANTHER CASKIN 135 636 - GO:0016020(PANTHER)
Tan01g0786 646 Pfam Domain of unknown function 479 593 IPR026961 -
Tan01g0786 646 SUPERFAMILY Ankyrin repeat 134 317 IPR036770 -
Tan01g0786 646 Gene3D - 130 323 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0786 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0786 Tan-Chr1:7496048 Tan01g0788 Tan-Chr1:7496048 1.50E-240 dispersed
Tan01g0785 Tan-Chr1:7496048 Tan01g0786 Tan-Chr1:7496048 0.00E+00 tandem
Tan01g0786 Tan-Chr1:7496048 Tan01g0787 Tan-Chr1:7496048 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
Vvi16g779 . . . . . . . . . . . . . . Sed13g0543 . . Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318