Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0790 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGCAGTGGCAGTGATTCTGAAGCGGAGGAGAGTGACTACGATGACGAGATTGACGACCTACAGGCTGATAATAACTCCCAACAGAATAGAAGCAGATATCTGCAAGGAAATGCCAGTGACAGTGACGATTCTGATAAAGATAAACGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTAACTGAGTCTGAGAAGGTGCCAACTCTTTATATCAAGGCACTTGTGGTGTTAGAGGACTTCCTAAATCAAGCCATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTAAAAAAGAACAATAAGCAATATGAAGAGTTAATTACTAAGTGTAGGGAGAATCCCGAGGTTGAGGAAGAAAAAGATGATGAGTTGGAGACAGAGGAAGAGGAGGATGATGATGATTCTGAAATTCATGAGGATCCTACTAAATTGTTGTCAGCATCAGACGACGACGACGACGACGACGAAGACCCAGTGGATAATGGTTGGACGAAAAAGTTGAGCAAAAAAGATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTTAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAAGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTATATCTGCACAATTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAATATGCTTTCTATAATTGACATTCTTGTGCAGAATTCTAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAACGAGAGCCAGAAGCCAGCAGACTATAAGGGCACAATCCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTTCAAGAATATTTGGAACGAACTGGGGATTACAAAGCAGCTTCGAAAGTTGCGCTAAGGCGTGTTGAACTGATATATTACAAACCACAGGAGGTTTATGATGCCATGAGAAAGCTTGTAGAGCTGTCAGAAGACGGAGATAGTGGAGATGCAAGGGAGGAGGCTAAAGTTGTAGAAGAGAGTAGGGGCCCTGCTGCATTTATTGTCACACCGGAGCTTGTACCTCGCAAGCCCACCTTTCCGGAGAGTAGTAGAGCTTTTATGGACATTCTGGTGACCCTTATATACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGTGATATTTACCACCATGCCCTCTTGGATGAATTTTATATTTCTAGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGCGGATTTCGGGTTGGCCTGATTAGTGAAGGGCATGGCTGCCTTTCAGAATTATATTCTGGTGGGAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATATCATGAAAAGACTCCGGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCATATGCACATAAATCTTGAGCTCCTTGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTTCCCAACATGGCAGGCCATGTTCATGATGCAAAGCGCAAGGTTATTAGCAAGAACTTTAGAAGGTTACTTGAGGTGAGTGAGAGACAAACGTTCACCGGTCCTCCTGAGAACGTCAGAGATCATGTAATGGCTGCTACCAGAGCCCTTCGCAAGGGTGATTTCCAAAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAGGCTACTTAGGAATCGTGATGATGTGCTGGAAATGGTCAAAGGAAAGATCAAGGAGGAAGCTCTGAGGACTTACCTTCTCACATACTCTTCCTCTTATGATTCTCTGAGTTTGGACCAACTGACTCGAATGTTCAACCTCGCAAAGGGTCAAACACACAGTATTGTTAGCAAGATGATGATAAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGGTGTGTCATCTTCCATGATGTTACGCTCACACGGTTACAGGGCCTGGCATTCCAGTTGGCTGATAAGCTGTCAATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCAAGGATAGGAGGAGGATTAGATTTACCAATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGCTGTAGGTGGGGGTAGCAGGTGGCCAGACAACATGTCTTATAATCAAGGAAGGCAAGGTGGTGGTAATTCGCGTGCAGGATATAGCGGCGGAGGGCGAGGCCAAGGTGGGGGTGGTGGATATTCTAGAGACCGGATGGGTCAGTCACGAGGAGGTAATGCAGGATACCAAAGCACCCGTTATCAAGATGCCGCATATGGATCGGGGAGGACTGCTTATCAGTCTGGTTCTGTCCGAGGATCCCAAATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTCATGCTTAA 2811 44.68 MASRFWTQGGGSGSDSEAEESDYDDEIDDLQADNNSQQNRSRYLQGNASDSDDSDKDKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVVLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKDDELETEEEEDDDDSEIHEDPTKLLSASDDDDDDDEDPVDNGWTKKLSKKDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMRKLVELSEDGDSGDAREEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISSDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGHVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWRLLRNRDDVLEMVKGKIKEEALRTYLLTYSSSYDSLSLDQLTRMFNLAKGQTHSIVSKMMINEELHASWDQPSGCVIFHDVTLTRLQGLAFQLADKLSILAETNERAVEARIGGGLDLPMRRRDNQEYAAGAVGGGSRWPDNMSYNQGRQGGGNSRAGYSGGGRGQGGGGGYSRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSVRGSQMDASARMVSLNKGVHA 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7531804 7536613 + Tan0020270.1 Tan01g0790 738214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0790 936 MobiDBLite consensus disorder prediction 178 198 - -
Tan01g0790 936 MobiDBLite consensus disorder prediction 838 895 - -
Tan01g0790 936 MobiDBLite consensus disorder prediction 139 157 - -
Tan01g0790 936 MobiDBLite consensus disorder prediction 1 73 - -
Tan01g0790 936 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 886 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Tan01g0790 936 MobiDBLite consensus disorder prediction 139 225 - -
Tan01g0790 936 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 650 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan01g0790 936 Coils Coil 20 40 - -
Tan01g0790 936 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 879 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan01g0790 936 MobiDBLite consensus disorder prediction 158 177 - -
Tan01g0790 936 MobiDBLite consensus disorder prediction 1 15 - -
Tan01g0790 936 Pfam PCI domain 715 787 IPR000717 -
Tan01g0790 936 MobiDBLite consensus disorder prediction 17 31 - -
Tan01g0790 936 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Tan01g0790 936 MobiDBLite consensus disorder prediction 847 861 - -
Tan01g0790 936 Coils Coil 147 174 - -
Tan01g0790 936 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 IPR000717 -
Tan01g0790 936 MobiDBLite consensus disorder prediction 49 73 - -
Tan01g0790 936 MobiDBLite consensus disorder prediction 32 48 - -
Tan01g0790 936 SUPERFAMILY Winged helix DNA-binding domain 714 788 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0790 K03252 - csv:101203990 1556.96