Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0792 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGCAGCAGCCGTCGCCGCCCTAAGAAGGCGGCTCAGTCATCACCGTTGTTGTCGCCTCAGCCACCTTTGCCGATTGGTGCCGGTTCTCCTCCCATTTACAATAATGGCAGCGGCTTGGTTGGTGGTGGTGGTGGGGCTGTTGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTCGACAGGTTGGGGCAGTCAGAGCTTTTAGAGTGGGACAAGAGCGCTATAATTCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCGATTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTATTTGATCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGCTAAAGAAGCTACTTGCTAAGAAGAGTGCATCTCAGGGCCATGGAACTGTAGATGAACGTGAAAATGATGTGAATGTTTCTAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGTGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTAGAAAATGCGTTGGAGGTTGTGTGTATGTACTTAGATTCCAGTGTGACGGACCTTGAGAGAGATGCTTATCCTGTCCTGGATGAACTGGCTAGGAATGTCAGCACAAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACTCGTATTCTTGCACGCGTTCAAAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACGAGGAAATGGATGCAGAATCAACAATCTGATGCTTTGCTGGGAGGTCTAGCTTCAAACAGTACCACTGCCATTGTTCCCCACCTTCGTCGACTTAGTTCCACCCGGAGTGGAAGTGTGGTGACCAGCAATCTTTTAGATGACAATGATGTAGAGGATCTGGAGATGTTGCTCGAGGCGTATTTTATGCAGTTAGATGGAACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTCCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCGTTGAAACCTTAATCGCCGGGTTGTTTGGCATGAACATCCCTTGTACATTATACGACACGGATGGGATATTCGGGTACTTCGTCGGAGGTACTTCAGCTGGTTGTTTGTTGCTTTTTATGCTTATTATTGGGTATGCAAGATGGAAGAAGCTTCTTGGTTCATGA 1347 46.03 MGKGPFSFRRSSSRRRPKKAAQSSPLLSPQPPLPIGAGSPPIYNNGSGLVGGGGGAVGKVKKKAGGARLWMRLDRLGQSELLEWDKSAIIRRAAIPARDLRILGPVFSDSSNILAREKAMVVNLEFIKAIVTAEEVLLFDPLRQEVIPFVDQLKKLLAKKSASQGHGTVDERENDVNVSRGGKWLPVSEAAEGVQYELPFEFQVLENALEVVCMYLDSSVTDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYDTDGIFGYFVGGTSAGCLLLFMLIIGYARWKKLLGS 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7556071 7565795 + Tan0002713.1 Tan01g0792 738216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0792 448 Gene3D - 58 141 - -
Tan01g0792 448 CDD Mrs2_Mfm1p-like 70 445 IPR039204 -
Tan01g0792 448 MobiDBLite consensus disorder prediction 1 38 - -
Tan01g0792 448 Pfam CorA-like Mg2+ transporter protein 335 439 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Tan01g0792 448 Gene3D Magnesium transport protein CorA, transmembrane region 145 379 - -
Tan01g0792 448 Pfam Magnesium transporter MRS2-like 83 291 - -
Tan01g0792 448 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 59 445 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Tan01g0792 448 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 435 IPR045863 -
Tan01g0792 448 FunFam Magnesium transporter MRS2-1 58 141 - -
Tan01g0792 448 Coils Coil 246 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0792 K16075 - - csv:101203496 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0792 Tan-Chr1:7556071 Tan06g2463 Tan-Chr6:77240801 1.60E-87 dispersed
Tan01g0792 Tan-Chr1:7556071 Tan01g0793 Tan-Chr1:7556071 2.20E-238 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g2493 . 1 447 MRS2 Gene Family AT1G16010 84.1 4.1e-205 711.4
Tan02g2275 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G16010 53.1 1.7e-110 397.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G16010 54.5 7.5e-82 302.0
Tan07g2270 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan07g2271 . 32 326 MRS2 Gene Family AT1G16010 51.7 9.5e-77 285.0
Tan06g2463 . 1 364 MRS2 Gene Family AT5G64560 80.2 1.8e-156 549.7
Tan07g2269 . 1 367 MRS2 Gene Family AT5G64560 70.3 1.2e-133 473.8
Tan07g2271 . 1 327 MRS2 Gene Family AT5G64560 69.8 7.5e-115 411.4
Tan07g2270 . 1 326 MRS2 Gene Family AT5G64560 70.0 9.8e-115 411.0
Tan02g1037 . 14 495 MRS2 Gene Family AT3G19640 64.0 1.6e-154 543.5
Tan01g0792 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan01g0793 . 1 448 MRS2 Gene Family AT3G58970 64.7 1.3e-147 520.4
Tan02g2275 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2276 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan02g2277 . 6 376 MRS2 Gene Family AT2G03620 68.3 1.9e-135 479.9
Tan04g2493 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.7e-112 403.7
Tan02g2278 . 6 285 MRS2 Gene Family AT2G03620 67.7 7.9e-97 351.7
Tan01g0792 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan01g0793 . 58 447 MRS2 Gene Family AT4G28580 50.5 3.0e-93 339.7
Tan06g2463 . 1 326 MRS2 Gene Family AT5G09690 74.8 2.3e-125 446.0
Tan07g2269 . 1 329 MRS2 Gene Family AT5G09690 66.3 1.1e-111 400.6
Tan07g2270 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan07g2271 . 1 326 MRS2 Gene Family AT5G09690 66.6 2.5e-111 399.4
Tan04g2493 . 40 383 MRS2 Gene Family AT5G09690 50.9 9.6e-79 291.2
Tan06g2463 . 23 286 MRS2 Gene Family AT5G09720 67.5 7.2e-89 324.7
Tan07g2269 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2270 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan07g2271 . 31 289 MRS2 Gene Family AT5G09720 61.3 2.0e-75 280.0
Tan04g2493 . 1 447 MRS2 Gene Family AT1G80900 82.8 6.8e-200 694.1
Tan02g2275 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2276 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2277 . 6 376 MRS2 Gene Family AT1G80900 53.6 1.8e-107 387.1
Tan02g2278 . 6 285 MRS2 Gene Family AT1G80900 54.5 1.3e-78 291.2
Tan07g2270 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan07g2271 . 32 326 MRS2 Gene Family AT1G80900 50.3 2.4e-72 270.4
Tan08g1157 . 18 439 MRS2 Gene Family AT5G22830 66.7 2.2e-148 523.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47