Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0804 ATGATATCACTCACTCTATCCTCGTATTTTTCTTTCATATATTTCTTCCTTCTACTTTTGATGCCAACAAATCTTGCACTCGGATCTGATCTATCAATGCAAGAGAATATCAAATGTATAGAAAGTGAAAGACAAGCACTCTTATCCTTCAAGCAAGAACTTGTGGATAGATATGATATTCTCTCTTCTTGGAAAACAGAAGCCAACAATGATTGTTGCAATTGGAGAGGTGTCCGATGCAGCAACAATACAAGTCATCATATCATTAATCTTGATCTTCATGGCTCAGATGATAAACGGTTGATGGGCGAGGTTGGTTCTTCCTTAGCTCAGTTGTCACACCTCAACTACTTAGATCTTAGTTATAATGAGTTTGATCGAATTTCTCTTGAGGATATTAGTTCTCTGATCAATTTAAATTATCTCAACCTATCTCATAACAAGTTTTCAAGTTTCATTCCTCCCCATCTTGGAAACCTTTCGAAATTGTTGGTTCTTGATCTTGGATCAAATGGTTGGTTAAATGATAATCTTAGATGGCTCTCGCGTCTTTCTTCTTTAAGAGATCTCGATCTGAGTTGGATAGATCTTCACAGTATCGATGATTGGGTAGGTGTCATGAACAAACTTCCTCTTTTACAAAGTTTATCTTTGAGCAATTGCACTCTTCCACAACCCATTCTACGAACTTATGCAAATACCAATTTCTCTAGATTTTTAGTTAAATTGGACCTCTCTCTCAATCATGATCTCAATTCCTCAATTTCTTCTTGGCTTATCAGCTTTAGTAACAGTCTCACTCATTTAAATCTTGCATTCAACAATTTGCAAGGTTTCAACATGGATGGTTTTGGGAATTTCCCTTCTCTCATCTTCCTTAATCTTCATTCCACTAAAGTTGATTTTCATTCTCCCAAGTTCTTTAAAACTCTTTGTAATTTGAAGTTGTTAGACTTATCTGAAAATGATGGGGGAGGATTCCTGTCTGATTTTCTTGAAATATTTCCACAGTGTATGCTTAACTCATTAGAGGCTTTATATCTTGGATCAAACAAATTCTTGGGATCCTTGCCAAACTTCACTTTGTTGCCATCTTTGAAAGTATTAGATATATCTAACAACATGTTGAATGGAGCTATTCCTCAAAGTTTGGGACAATTATCAAACTTGGAGTATATAGGTCTTCATCAAAATTTATTGGATGGTGAAGTTTCTGAAGTTCATTTCTCAAAACTTATAAATTTAAAAGCTTTGAATCTAGATGGAAACTTATTGACCTTAAACTTAAAGTCTGATTGGGTTCCTCCTTTCCAATTGCAGTCAATAATTTTGAGAAATTGCACATTGGGCCCACTTTTTCCAAGGTGGCTTCAAACTCAAAATTTCTCTGTGCTTGATATTTCACTCACTCAAATTTCAGATACCATTCCCATTTGGTTTTGGAATAACTTGTCTCCAAACTTGATGTTTCTTGATCTTTCTGAAAATTATATCAGGGGTGAAATCCCAAATTTAGCCTTGAAGTTCAAAGGTATGCCTGTGATAATTTTGGGGTTAAATGATTTTGAGGGTAAAATTCCATCCTTTCTTTTTGGAGCACAAAACCTGGATGTTTCAAATAATAAATTTTCTGACCTATCTGGTTTATGTGAAGTCACGTACTCCCCTTTAAATTTATTGGATACTTGCAACAACTACTTATTTGGACAAGTTCCTAATTGTTGGGACAAGATGCCCAATTTATTATCTTTAAGTTTGTCCTATAACTATTTTTCTGGAGACATTCCAAGTTCTTTAGGAAATCTCACGAGATTGAAATTCCTAAATCTGCGCAAAAATAATTTCTCTGGGGAGTTTCCTTCTTGGTTCAACTTTACAGATTTGATGGTCTTTGATGCAGTACGAAACAATTTATCTGGAACATTACCTTCATGGATTGGATCAAGGTTACCAAATTTGGTTCGTTTGAGTTTGAATTCAAATCAGTTTCATGGAAACTTACCTTCAAGTCTTTGCAACCTTGGAAGAATCGAAGTATTGGATATTTCATCCAATTCTATTTCTGGAATCATACCAAGTTGTATCCATAAGTTTAATGTCTTGAGTACACGAACGTCGAATCCATCTATCGTTCCTGAATACTTGAGAGATTTGATGATGATGTGGAAAGGGCGAGAAATGCTCTTCCATGGTGAAAATTTACAATTTCAAAGGAGTATTGACTTGTCTTGCAATCGTTTAAGTGGAGAGATTCCTAATGAAATCACAATGCTTGTTGGTTTGGTTTCTTTGAATCTCTCGAGGAATGAATTAAGGGGTCAGATTCCTATGGAGATAGGCCAACTTCAATGGTTGGATTTTATGGATCTGTCAAGAAATCATTTGTATGGACCAATTCCATCTAGTCTTTCTCAAATATCGAGATTGAGTATGTTGGACCTATCATACAATAACCTTTCCGGAAGAATTCCCTCGGGAACTCAACTTCAAGGTTTTCCCAAATCTTCCTATGAAAACAACCCTTTTCTTTGTGGAGATCCATTGAAGAAATGCTTTGGCGATGAAGCTGAAACCATTCAAGAATCGACCATCAATAATAATGTTCATTTTGTGAATAATGAATATGAAGATCAAGAAGACAAACAACTCATAGTACGAGACCTGATTATTAGCATGTCTTTTGGGTTTATAATCGGTTTCTGGGGAATATTTGGTAGTCTTGTACTTTATAGAAGATGGAGACATGCCTACTTCAAGTTTCTAACGAAAATTATTGAGAAAGTTATGCGAAGTAATTAA 2799 35.19 MISLTLSSYFSFIYFFLLLLMPTNLALGSDLSMQENIKCIESERQALLSFKQELVDRYDILSSWKTEANNDCCNWRGVRCSNNTSHHIINLDLHGSDDKRLMGEVGSSLAQLSHLNYLDLSYNEFDRISLEDISSLINLNYLNLSHNKFSSFIPPHLGNLSKLLVLDLGSNGWLNDNLRWLSRLSSLRDLDLSWIDLHSIDDWVGVMNKLPLLQSLSLSNCTLPQPILRTYANTNFSRFLVKLDLSLNHDLNSSISSWLISFSNSLTHLNLAFNNLQGFNMDGFGNFPSLIFLNLHSTKVDFHSPKFFKTLCNLKLLDLSENDGGGFLSDFLEIFPQCMLNSLEALYLGSNKFLGSLPNFTLLPSLKVLDISNNMLNGAIPQSLGQLSNLEYIGLHQNLLDGEVSEVHFSKLINLKALNLDGNLLTLNLKSDWVPPFQLQSIILRNCTLGPLFPRWLQTQNFSVLDISLTQISDTIPIWFWNNLSPNLMFLDLSENYIRGEIPNLALKFKGMPVIILGLNDFEGKIPSFLFGAQNLDVSNNKFSDLSGLCEVTYSPLNLLDTCNNYLFGQVPNCWDKMPNLLSLSLSYNYFSGDIPSSLGNLTRLKFLNLRKNNFSGEFPSWFNFTDLMVFDAVRNNLSGTLPSWIGSRLPNLVRLSLNSNQFHGNLPSSLCNLGRIEVLDISSNSISGIIPSCIHKFNVLSTRTSNPSIVPEYLRDLMMMWKGREMLFHGENLQFQRSIDLSCNRLSGEIPNEITMLVGLVSLNLSRNELRGQIPMEIGQLQWLDFMDLSRNHLYGPIPSSLSQISRLSMLDLSYNNLSGRIPSGTQLQGFPKSSYENNPFLCGDPLKKCFGDEAETIQESTINNNVHFVNNEYEDQEDKQLIVRDLIISMSFGFIIGFWGIFGSLVLYRRWRHAYFKFLTKIIEKVMRSN 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7782046 7787188 + Tan0004304.2 Tan01g0804 738228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0804 932 SMART LRR_typ_2 184 207 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 112 135 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 806 829 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 578 602 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 363 387 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 650 674 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 758 782 IPR003591 -
Tan01g0804 932 SMART LRR_typ_2 136 160 IPR003591 -
Tan01g0804 932 ProSiteProfiles Leucine-rich repeat profile. 138 161 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 FunFam Leucine-rich repeat receptor-like protein kinase TDR 547 852 - -
Tan01g0804 932 Pfam Leucine rich repeat 108 149 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine rich repeat 342 400 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 604 623 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 652 674 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 809 826 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 580 602 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 761 782 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 738 756 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 Pfam Leucine Rich Repeat 677 697 IPR001611 GO:0005515(InterPro)
Tan01g0804 932 SUPERFAMILY L domain-like 363 536 - -
Tan01g0804 932 Gene3D Ribonuclease Inhibitor 234 334 IPR032675 -
Tan01g0804 932 Gene3D Ribonuclease Inhibitor 38 233 IPR032675 -
Tan01g0804 932 Gene3D Ribonuclease Inhibitor 461 855 IPR032675 -
Tan01g0804 932 PANTHER LRR RECEPTOR-LIKE KINASE 239 390 IPR052938 -
Tan01g0804 932 SUPERFAMILY L domain-like 68 401 - -
Tan01g0804 932 Gene3D Ribonuclease Inhibitor 335 434 IPR032675 -
Tan01g0804 932 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 408 509 - -
Tan01g0804 932 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
Tan01g0804 932 SUPERFAMILY L domain-like 530 849 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0804 K13466 - - mdm:103407325 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0804 Tan-Chr1:7782046 Tan11g2169 Tan-Chr11:56122399 1.90E-50 dispersed
Tan01g0804 Tan-Chr1:7782046 Tan01g0806 Tan-Chr1:7807230 1.10E-191 proximal
Tan01g0803 Tan-Chr1:7782046 Tan01g0804 Tan-Chr1:7782046 0.00E+00 tandem
Tan01g0804 Tan-Chr1:7782046 Tan01g0805 Tan-Chr1:7806800 1.40E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g822 . . . . . . . . . . . . . . Sed01g3718 . . Bhi01g01562 Tan01g0804 Cmetu09g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86