Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0806 ATGATATCACTCACTCTATCTTGGTATTTTTCTTTCATCTATCTCTTCCTTTTACTTTCCATGCTTGCAAATCTTGCACTAGGATTCAATTTATCAATGCAAGAGAATATCAAATGTATAGAAAGTGAAAAACAAGCCCTCTTATCCTTCAAAAAAGGACTCGTGGATAGATATGATATTCTCTCTTCTTGGAAAACACATGCCAACAATGATTGTTGCAATTGGAGAGGTGTCCGATGCAACAACAATACAAGTCATCATATCATTAGGCTTGATCTTCATGGCTCAGATGATAAGCGTTTGATGGGTCAGGTTGGTTCTTCCTTGGCTCAGTTATCACACCTCAACTATTTAGATCTTAGTTACAATGAGTTTGATCGAATTTCTCTCGAGAATATTAGTTCTCTAATCCATTTAAATTATCTCAACCTATCTCATAACAAGTTTGCAAGTTTCATTCCTCCCCATCTTGGAAGTCTTTCGAAATTGTTGGTCCTTGATCTTGGATCAAATAGTTGGTTAAATGATAATCTTAGGTGGCTCTTGCGTCTTTCTTCTTTAAGACATCTCGATTTGAGTTGGGTAGACCTTCATAGTGCCAATGATTGGATAGGTGTCATGAACAAACTTCCTCTTTTACAAAGAGGATTGCTATATGATTTTCTTGAAATCTTTCCACAGTGTGTGCTTAACTCATTAGAGGGTTTATATCTTGGGTCAAACAAATTCTTTGGATCCTTGCCAAACTTCACTTTGTTTCCATCTTTGAAAGTATTAAATTTATCTAACAACATGTTGAATGGAGCTATTCCTCAAAGTTTGGGACAATTATCAAACTTGGAGTATATAAGTCTTCATCAAAATTTATTGGAGGGTGAAGTTTCTGAAGTTCATTTCTCAAAGCTTATAAATTTAAAAGCTTTGAATCTAGAAGGAAATTTATTGACCTTAAATTTAAAGTCTGATTGGGTTCCTCCTTTCCAATTGCAGTCAATAATTTTGAGAAATTGCACATTGGGCCCACTTTTTCCAAGGTGGCTTCAAACTCAAAATTTCTCTGTCCTTGATATTTCACTAACTGGAATTTCAGACATCATTCCCAATTGGTTTTGGAATAACTTGTCCCCAAACTTGATGTTTCTTGATCTTTCCCAAAATCATATGAAAGGGGAAATCCCAAATTTAGCCCTGAAGTTCAAATATATGCCTGTGATACTTTTGGGATTAAATGAATTTGAAGGTAAAATTCCACCCTTCCTTTTTGGAGCACAAAACCTGAACGTTTCAAATAATAAATTTTCTGACATATCTGGTTTGTGTGAAGTCACGTACTCCCCCTTTAAATTTATTGGATACTTGCAACAACCAATTATTTGGACAAGTTCCTAA 1389 34.92 MISLTLSWYFSFIYLFLLLSMLANLALGFNLSMQENIKCIESEKQALLSFKKGLVDRYDILSSWKTHANNDCCNWRGVRCNNNTSHHIIRLDLHGSDDKRLMGQVGSSLAQLSHLNYLDLSYNEFDRISLENISSLIHLNYLNLSHNKFASFIPPHLGSLSKLLVLDLGSNSWLNDNLRWLLRLSSLRHLDLSWVDLHSANDWIGVMNKLPLLQRGLLYDFLEIFPQCVLNSLEGLYLGSNKFFGSLPNFTLFPSLKVLNLSNNMLNGAIPQSLGQLSNLEYISLHQNLLEGEVSEVHFSKLINLKALNLEGNLLTLNLKSDWVPPFQLQSIILRNCTLGPLFPRWLQTQNFSVLDISLTGISDIIPNWFWNNLSPNLMFLDLSQNHMKGEIPNLALKFKYMPVILLGLNEFEGKIPPFLFGAQNLNVSNNKFSDISGLCEVTYSPFKFIGYLQQPIIWTSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7807230 7808948 - Tan0008948.1 Tan01g0806 738230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0806 462 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 298 400 - -
Tan01g0806 462 SUPERFAMILY RNI-like 86 433 - -
Tan01g0806 462 Gene3D Ribonuclease Inhibitor 218 447 IPR032675 -
Tan01g0806 462 SMART LRR_typ_2 253 277 IPR003591 -
Tan01g0806 462 SMART LRR_typ_2 112 132 IPR003591 -
Tan01g0806 462 SMART LRR_typ_2 136 160 IPR003591 -
Tan01g0806 462 Gene3D Ribonuclease Inhibitor 38 217 IPR032675 -
Tan01g0806 462 PANTHER LRR RECEPTOR-LIKE KINASE 36 435 IPR052938 -
Tan01g0806 462 Pfam Leucine rich repeat 108 149 IPR001611 GO:0005515(InterPro)
Tan01g0806 462 Pfam Leucine rich repeat 254 315 IPR001611 GO:0005515(InterPro)
Tan01g0806 462 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0806 K13466 - - mdm:139197753 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0803 Tan-Chr1:7782046 Tan01g0806 Tan-Chr1:7807230 1.10E-191 dispersed
Tan01g0806 Tan-Chr1:7807230 Tan08g1433 Tan-Chr8:58466596 1.00E-20 dispersed
Tan01g0804 Tan-Chr1:7782046 Tan01g0806 Tan-Chr1:7807230 1.10E-191 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g824 . . . . . . . . . . . . . . . . . Bhi01g01561 Tan01g0806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86