Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0808 ATGGGGTGCGTTTGTTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGTTGTCAAGTAAGGCCTCGTCTGACCTGCGGGTGGCTAGAGTGACTTCATCATCGAGGGATGAAGCTTATCGATCTAAGGATCAGCATGATGGTAATGATGCAAGAGTGATGTTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCAGGGCGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGTGGCTGCTCAACATCAACATCCTTCAATGGGTAGAATTCCGAAGGCAGCAGAGGGAGACCACATTGCTGCAGGGTGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACATATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTGACATCAAGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACACCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGGGATATTAAGGGTTCCAACCTTTTAATTGACAATAATGGCATCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCACCAAAATCAACCACTGACAAGTCGGGTTGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGCGCCACTTATTATGGTACGGCTGTGGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACGGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCGGAGGATTATTGGAGAAAGTCAAGGTTGCCACATGCAACGATATTTAAGCCGCAACAGCCCTATAGACGCTGTGTTGCAGACACGTTTAAGGATTTCCCTGCTCCAGCTTTAGCTCTCATTGAGACGTTACTCTCTATAGATCCTGCTGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTTTTTTCTACAAAGCCACTTCCTTGCGATCCTTCAAGCTTGCCAAAATATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGACTTGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCCGTCCCTGCACCTGATGCCAATGCTGAGTTAGCCTCATCAATGCAGAAAAGGCAATCCAATTCGAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGGACCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCGAAGGCTAGTAAGAACCCAGATGACGCTCCCAAAATCTCAACCGGGGCCGAGACTTTCACAACTTCAGGGCTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTGCAGGGAAAAGTCCGACTCTTCACAAGGAGAGGTTCAAAAACTAATTGGCAGGTTTCCTGGTTCCTTCAAAGAAACCTCGGAATCATCGATGCTACCGGACCAGAAGTTCTCAAATCACAGTATTGTTGGGTCACACGACAAAGAAAGGAGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCATGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGAAAGGTTCAAGCTGACGGGAAACAGATGTCGACAAATTCATTATTCGTCTCCGGTCGTTAA 2127 46.69 MGCVCCKPSAIEDSKESPRERLSSKASSDLRVARVTSSSRDEAYRSKDQHDGNDARVMLIDKQVNGSGRLQGENFERKREKMEHMVAAQHQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGPERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDAPKISTGAETFTTSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGR 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7857122 7864485 + Tan0011016.1 Tan01g0808 738232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0808 708 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0808 708 SMART serkin_6 134 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0808 708 MobiDBLite consensus disorder prediction 447 563 - -
Tan01g0808 708 PANTHER CELL DIVISION PROTEIN KINASE 133 418 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan01g0808 708 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Tan01g0808 708 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Tan01g0808 708 MobiDBLite consensus disorder prediction 35 53 - -
Tan01g0808 708 CDD STKc_CDK9_like 134 418 - -
Tan01g0808 708 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Tan01g0808 708 MobiDBLite consensus disorder prediction 1 53 - -
Tan01g0808 708 MobiDBLite consensus disorder prediction 685 708 - -
Tan01g0808 708 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0808 708 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Tan01g0808 708 MobiDBLite consensus disorder prediction 694 708 - -
Tan01g0808 708 MobiDBLite consensus disorder prediction 12 27 - -
Tan01g0808 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0808 708 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524(InterPro)
Tan01g0808 708 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Tan01g0808 708 MobiDBLite consensus disorder prediction 447 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0808 Tan-Chr1:7857122 Tan05g0762 Tan-Chr5:5558954 2.10E-203 dispersed
Tan01g0808 Tan-Chr1:7857122 Tan04g0087 Tan-Chr4:630286 7.80E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67000 PF00069 Pkinase 1.00E-68 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0808 - - - 0.0