Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0872 ATGCTTCGTTGGCGAGCTCTGTCGTTATATTGCTTTCCTCAGGTTAGAACTGCCGGAGACTTCTTGTGGTCAAGAAACAAAGATTCGTCGGCTGCACAAACGGCAACAGCAGTTGAAGAGATTCCAAATATTCTGAACGTTCGCTTGTTCTCATACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTCTGAAAATAAACTTGGACAGGGAGGCTTTGGATCTGTCTACAAGGGAAGGCTCCGAAATGGAACTCTGGCTGCCATAAAGGTACTATCCGTGGACTCAAGCCAAGGGACACGGGAGTTTTTGGCAGAAATCAATGTGATTACAGCTATAAACCATGATAACCTGGTTAAGTTGCATGGTTGTTGTGTGGAAGGACAGCACCGGATCTTGGTCTATCCTTACCTGGAAAATAGCAGCCTTGACAGGATGCTTCTTGGTAGAGGACATGGGAATATCCAATTCAATTGGCAAGCAAGGTGTAAAATATGCATTGGCATTGCACAGGGGCTCACGTTCCTTCACGAGGAAGTTCAGCCGCATGTTATACACCGAGACATCAAAGCAAGCAATATCCTGCTTGATAAGGACTTAACCCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACATGACCCACGTTAGTACACGTATTGCTGGGACAGAAGGTTATCTTGCACCTGAATACGCCATACGAGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTCTTGGAGATCGTTTGTGGGAGGTACAATATAAATAGACGGTTGCCTGCTGAAGAACCATATCTTCTAGAAATGGTGTGGGAGCATCACGAGAAAGGACAATTGCTGGAATTGGTAGACATATCATTACATGGAGACTTTGAGGCTGAGGAGGCTTGCAGATATTTAAAAGTCGGTCTTCTCTGCACCCAAGATATGCCAAAACTCCGGCCATCTATGTTGACCGTCGTCAAGATGCTAACAGGTGATGTCGATATATCTGATCAAACAATATCTAGACCAGGAATGCTTTCAGACTTCATGCTTCGAAGAGATGTACTAGGCAAGAAAGGCGAGTTCGATTCAAAGCTTGCATCAACAACTGAAGACTCGGGAAAGCCAATTGATTCAACTTCATCGTCAGGATTCATGGACACCTCGTATGCTACCATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 1224 43.87 MLRWRALSLYCFPQVRTAGDFLWSRNKDSSAAQTATAVEEIPNILNVRLFSYEELRKATENFRSENKLGQGGFGSVYKGRLRNGTLAAIKVLSVDSSQGTREFLAEINVITAINHDNLVKLHGCCVEGQHRILVYPYLENSSLDRMLLGRGHGNIQFNWQARCKICIGIAQGLTFLHEEVQPHVIHRDIKASNILLDKDLTPKISDFGLARLLPAHMTHVSTRIAGTEGYLAPEYAIRGQATRRTDIYSFGVLLLEIVCGRYNINRRLPAEEPYLLEMVWEHHEKGQLLELVDISLHGDFEAEEACRYLKVGLLCTQDMPKLRPSMLTVVKMLTGDVDISDQTISRPGMLSDFMLRRDVLGKKGEFDSKLASTTEDSGKPIDSTSSSGFMDTSYATITFNSIFDRSN 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8365728 8371412 - Tan0008121.1 Tan01g0872 738296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0872 407 SMART serkin_6 62 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0872 407 ProSiteProfiles Protein kinase domain profile. 62 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0872 407 Gene3D Transferase(Phosphotransferase) domain 1 138 345 - -
Tan01g0872 407 CDD STKc_IRAK 68 335 - -
Tan01g0872 407 Gene3D Phosphorylase Kinase; domain 1 32 137 - -
Tan01g0872 407 FunFam cold-responsive protein kinase 1 33 137 - -
Tan01g0872 407 FunFam Putative LRR receptor-like serine/threonine-protein kinase 138 345 - -
Tan01g0872 407 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 357 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Tan01g0872 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0872 407 SUPERFAMILY Protein kinase-like (PK-like) 41 333 IPR011009 -
Tan01g0872 407 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524(InterPro)
Tan01g0872 407 Pfam Protein kinase domain 63 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0872 Tan-Chr1:8365728 Tan01g0962 Tan-Chr1:9379165 6.60E-133 dispersed
Tan01g0872 Tan-Chr1:8365728 Tan05g2539 Tan-Chr5:76713709 3.70E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67002 PF00069 Pkinase 6.10E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0872 - - - 0.0