Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0880 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCCAAGTCGTCGTATAGAGATCCCAATGGTCTAGGAGGTGGAATTCTTCGAGTTTCTTCCTCGGAGATCGACGATGGCTCCGGTCAGCCCTGCGCCGGGACTTCCGCCGACCGGATGCAGCCTGAATCTGCTTGGTCCTCCATGCTTCCGGAGCTTCTCCGGGAGATCATTCAGCGGGTCGAGGCTTCCGAGGACACTTGGCCTAACCGCCAGAACGTTGTTTCGTGTGCTTGTGTCTGTAAGCGTTGGCGGGAGATTACTAAGGAGATCGCCAGGACTACCCCTCATTCTGGGAAAATCACTTTCCCATCTTGTCTCAAACAGCCTGGACCAAGTGATCCTCCGCATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGAAAATTTCTCTTGGCTGCTCGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGATGAAGACTTATCCCAAGGAAGCAATGCTTACGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACAATTTATGATAGCCAACCACCACATAATGGTGCAAAGCCTTCGAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCAGGTAACTTTGAGGTTGGACAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGTCCAAGGAGAATGATATGCTCCCTGAAGTGCCCAGTATCAGAAGACACTGGCACCAGCAAACCTTGTGAAAACTCGAAGATGAAGAAATCCGAGTCCTTTTCTTCTTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCACGAACACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCATCTGTTAAAAACTTTCAACTCGTCGCTACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGATGAAGAAACAGTCCTCCTACAGTTTGGTAAGGTAGGCGATGATACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAAGCTTTCGCCATCTGCCTTACGAGCTTTGGTACGAAGTTGGCGTGCGAGTAG 1164 46.99 MSLRRSFLSRRFSSKSSYRDPNGLGGGILRVSSSEIDDGSGQPCAGTSADRMQPESAWSSMLPELLREIIQRVEASEDTWPNRQNVVSCACVCKRWREITKEIARTTPHSGKITFPSCLKQPGPSDPPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDDEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPCENSKMKKSESFSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8465392 8469983 + Tan0009802.1 Tan01g0880 738304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0880 387 Gene3D - 52 105 - -
Tan01g0880 387 PANTHER TUBBY-RELATED 52 386 - -
Tan01g0880 387 SUPERFAMILY F-box domain 51 102 IPR036047 GO:0005515(InterPro)
Tan01g0880 387 Gene3D Tubby Protein; Chain A 114 387 IPR025659 -
Tan01g0880 387 SUPERFAMILY Tubby C-terminal domain-like 109 387 IPR025659 -
Tan01g0880 387 MobiDBLite consensus disorder prediction 207 227 - -
Tan01g0880 387 MobiDBLite consensus disorder prediction 14 53 - -
Tan01g0880 387 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Tan01g0880 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Tan01g0880 387 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Tan01g0880 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Tan01g0880 387 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Tan01g0880 387 PRINTS Tubby superfamily signature 315 331 IPR000007 -
Tan01g0880 387 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Tan01g0880 387 Pfam F-box domain 58 101 IPR001810 GO:0005515(InterPro)
Tan01g0880 387 ProSitePatterns Tub family signature 1. 315 328 IPR018066 -
Tan01g0880 387 MobiDBLite consensus disorder prediction 35 53 - -
Tan01g0880 387 Pfam Tub family 119 382 IPR000007 -
Tan01g0880 387 CDD F-box_AtTLP-like 58 102 - -
Tan01g0880 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0880 Tan-Chr1:8465392 Tan10g0947 Tan-Chr10:8248324 5.70E-102 dispersed
Tan01g0880 Tan-Chr1:8465392 Tan06g2627 Tan-Chr6:78854774 2.90E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26303 PF01167 Tub 3.80E-103 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0880 K19600 - csv:101211968 653.669