Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0910 ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGTGAAAACAACAAGAGGAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTATGGCAACTACAAGCTTCCCAAGCATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGTCCGTCGAACCTGACGGTACCACTTATCGTAAGGGATGCAAACCAATCGAACGTATGGATGTGGTCGGTGGATCGGCAGCTGCAAGCCCGTACGCATCACACCAGCCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGCTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATTTGTTGCTAATCCAAATGCTGATGGCAGTTCACTTATTCCATGGCTCAAAAACCTTTCATCTTCATCATCTTCAGCATCCTCGTCTAAACTCCCCAATCTCTATATTCATGGAGGTTCCATCAGTGCACCTGTTACTCCTCCTTTGAGTTCCCCAACTGCCAGAACACCCCGACTCAAAGCCGACTGGGAAGACCAATCCGTCCTTCCGGGATGGAGTGCACAATACTATTCCTCCCTGCCATCTTCTACTCCACCAAGTCCCGGGCGTCAGATTGTTCCTAATCCAGAATGGTTTGCCGGCCTTAGGATTCCTCAGGGTGGACCCAATTCTCCGACATTTAGCCTTGTTTCTACTAACCCATTCGGTTTCAAGGAAGCAGCAACAACAAATGGTGGAGGTTCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCCCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCATTTGGCAGCAATGCAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGATGATCTAGAGCTGACTCTTGGGAACTCAAGGACCAGGTAA 981 50.36 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWSVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSFVANPNADGSSLIPWLKNLSSSSSSASSSKLPNLYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSLPSSTPPSPGRQIVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAATTNGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8663365 8667088 + Tan0022172.1 Tan01g0910 738334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0910 326 MobiDBLite consensus disorder prediction 1 20 - -
Tan01g0910 326 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 139 IPR008540 -
Tan01g0910 326 MobiDBLite consensus disorder prediction 88 108 - -
Tan01g0910 326 MobiDBLite consensus disorder prediction 91 108 - -
Tan01g0910 326 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 326 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0910 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0910 Tan-Chr1:8663365 Tan05g2533 Tan-Chr5:76686586 1.20E-121 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1938 . 1 310 BZR Transcription Factor Family AT1G75080 60.0 4.1e-88 322.4
Tan03g1950 . 28 319 BZR Transcription Factor Family AT1G75080 60.5 1.7e-78 290.4
Tan02g1938 . 1 311 BZR Transcription Factor Family AT1G19350 59.7 1.3e-86 317.4
Tan03g1950 . 28 317 BZR Transcription Factor Family AT1G19350 60.8 6.1e-76 282.0
Tan03g1950 . 6 319 BZR Transcription Factor Family AT3G50750 56.6 2.2e-71 266.5
Tan02g1938 . 1 310 BZR Transcription Factor Family AT3G50750 52.7 2.9e-63 239.6
Tan01g0910 . 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.2e-50 197.2
Tan05g2533 . 80 328 BZR Transcription Factor Family AT4G18890 52.4 4.7e-50 195.3
Tan05g2534 . 1 247 BZR Transcription Factor Family AT4G18890 52.4 4.0e-49 192.2
Tan01g0910 . 1 326 BZR Transcription Factor Family AT1G78700 73.7 3.1e-117 419.1
Tan05g2533 . 1 328 BZR Transcription Factor Family AT1G78700 69.0 1.0e-104 377.5
Tan05g2534 . 2 247 BZR Transcription Factor Family AT1G78700 62.7 9.2e-61 231.5
Tan03g1950 . 28 200 BZR Transcription Factor Family AT4G36780 75.7 9.1e-59 224.6
Tan02g1938 . 33 204 BZR Transcription Factor Family AT4G36780 61.0 1.2e-42 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26304 PF05687 BES1_N 4.00E-65 No_clan Tan TF