Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g0919 | ATGAAGATTCAGTGCAATGTCTGTGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCCTGCGACGAGAAGATTCATGCGGCCAATAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCTTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATACTTTTGTAACTGGTCATCAGCGCTTTCTACTCACCGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTCCTTGTTCTTCCATGGCTAAGTCACATTCCAGAGAGAAATCTACTGAGACAAAAGTTAGACCGTTGCCTGAAAGGGAATTCTCGATGCCCTCTCCTGGTGAACTCAGCAGAAGCCTGTCTGTACAAGGTGGATCCGAAGACTTCATGGCAAATAGAATGTTGCTCACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTATTAATCTGACTGGATTCAGTCAGAATTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCGTCACCAATTTTGAGAGCTGCTGACGTTGAACTGGACGACGACGACGAGTGCTCGGGTCAAGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAACTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGCAAAGGTTCAACATTGTTCACATAACAGTACATTCTCGAAACGAAGGAGGCAATTCTAA | 891 | 47.25 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALEPTDPVPCSSMAKSHSREKSTETKVRPLPEREFSMPSPGELSRSLSVQGGSEDFMANRMLLTGDSVSGGFSQWQMDELINLTGFSQNYGYMDNGSSKADSGKLGDSDSSPILRAADVELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRTYHNSMDGAVFVPDISCSSAKVQHCSHNSTFSKRRRQF | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8736266 | 8739180 | - | Tan0019893.1 | Tan01g0919 | 738343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g0919 | 296 | CDD | Bbox1_BBX-like | 56 | 99 | IPR049808 | - | |
Tan01g0919 | 296 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - | |
Tan01g0919 | 296 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Tan01g0919 | 296 | MobiDBLite | consensus disorder prediction | 113 | 152 | - | - | |
Tan01g0919 | 296 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Tan01g0919 | 296 | Pfam | B-box zinc finger | 3 | 47 | IPR000315 | GO:0008270(InterPro) | |
Tan01g0919 | 296 | Pfam | B-box zinc finger | 53 | 96 | IPR000315 | GO:0008270(InterPro) | |
Tan01g0919 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Tan01g0919 | 296 | MobiDBLite | consensus disorder prediction | 121 | 135 | - | - | |
Tan01g0919 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
Tan01g0919 | 296 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
Tan01g0919 | 296 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Tan01g0919 | 296 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 277 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0919 | Tan-Chr1:8736266 | Tan06g1564 | Tan-Chr6:24504335 | 6.00E-35 | dispersed | |
Tan01g4472 | Tan-Chr1:110136871 | Tan01g0919 | Tan-Chr1:8736266 | 4.20E-06 | dispersed | |
Tan01g0919 | Tan-Chr1:8736266 | Tan02g2035 | Tan-Chr2:89736909 | 9.00E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26305 | PF00643 | zf-B_box | 3.20E-07 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g0919 | - | - | - | 0.0 |