Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0919 ATGAAGATTCAGTGCAATGTCTGTGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCCTGCGACGAGAAGATTCATGCGGCCAATAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCTTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATACTTTTGTAACTGGTCATCAGCGCTTTCTACTCACCGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTCCTTGTTCTTCCATGGCTAAGTCACATTCCAGAGAGAAATCTACTGAGACAAAAGTTAGACCGTTGCCTGAAAGGGAATTCTCGATGCCCTCTCCTGGTGAACTCAGCAGAAGCCTGTCTGTACAAGGTGGATCCGAAGACTTCATGGCAAATAGAATGTTGCTCACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTATTAATCTGACTGGATTCAGTCAGAATTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCGTCACCAATTTTGAGAGCTGCTGACGTTGAACTGGACGACGACGACGAGTGCTCGGGTCAAGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAACTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGCAAAGGTTCAACATTGTTCACATAACAGTACATTCTCGAAACGAAGGAGGCAATTCTAA 891 47.25 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALEPTDPVPCSSMAKSHSREKSTETKVRPLPEREFSMPSPGELSRSLSVQGGSEDFMANRMLLTGDSVSGGFSQWQMDELINLTGFSQNYGYMDNGSSKADSGKLGDSDSSPILRAADVELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRTYHNSMDGAVFVPDISCSSAKVQHCSHNSTFSKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8736266 8739180 - Tan0019893.1 Tan01g0919 738343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0919 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Tan01g0919 296 FunFam B-box zinc finger protein 22 1 93 - -
Tan01g0919 296 Gene3D Classic Zinc Finger 1 92 - -
Tan01g0919 296 MobiDBLite consensus disorder prediction 113 152 - -
Tan01g0919 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Tan01g0919 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 MobiDBLite consensus disorder prediction 121 135 - -
Tan01g0919 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0919 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0919 Tan-Chr1:8736266 Tan06g1564 Tan-Chr6:24504335 6.00E-35 dispersed
Tan01g4472 Tan-Chr1:110136871 Tan01g0919 Tan-Chr1:8736266 4.20E-06 dispersed
Tan01g0919 Tan-Chr1:8736266 Tan02g2035 Tan-Chr2:89736909 9.00E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2785 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 6.6e-84 308.5
Tan09g1648 . 20 366 C2C2-CO-like Transcription Factor Family AT5G24930 51.5 4.9e-55 212.6
Tan09g1648 . 5 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.8 7.4e-64 241.9
Tan02g2785 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.7 1.5e-53 207.6
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT3G07650 57.1 1.5e-91 334.0
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 54.8 4.5e-88 322.4
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT5G48250 57.7 3.1e-89 326.2
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 3.6e-85 312.8
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT5G48250 57.7 3.1e-89 326.2
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 3.6e-85 312.8
Tan02g0764 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.0 3.6e-52 203.0
Tan05g1250 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 52.1 1.4e-48 191.0
Tan01g0919 . 1 296 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 8.1e-78 288.1
Tan01g1213 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.6e-56 215.3
Tan03g2053 . 1 120 C2C2-CO-like Transcription Factor Family AT2G21320 75.0 1.5e-49 193.4
Tan01g1214 . 2 152 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 4.0e-39 158.7
Tan01g1213 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.2e-57 220.3
Tan03g2053 . 1 113 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 1.0e-48 190.7
Tan01g1214 . 1 153 C2C2-CO-like Transcription Factor Family AT4G38960 58.2 8.6e-40 161.0
Tan02g0764 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.4 1.6e-54 210.3
Tan02g2035 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 3.6e-46 182.6
Tan05g1250 . 1 209 C2C2-CO-like Transcription Factor Family AT4G39070 53.0 4.0e-45 179.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26305 PF00643 zf-B_box 3.20E-07 No_clan Tan TF