Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0919 ATGAAGATTCAGTGCAATGTCTGTGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCCTGCGACGAGAAGATTCATGCGGCCAATAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCTTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATACTTTTGTAACTGGTCATCAGCGCTTTCTACTCACCGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTCCTTGTTCTTCCATGGCTAAGTCACATTCCAGAGAGAAATCTACTGAGACAAAAGTTAGACCGTTGCCTGAAAGGGAATTCTCGATGCCCTCTCCTGGTGAACTCAGCAGAAGCCTGTCTGTACAAGGTGGATCCGAAGACTTCATGGCAAATAGAATGTTGCTCACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTATTAATCTGACTGGATTCAGTCAGAATTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCGTCACCAATTTTGAGAGCTGCTGACGTTGAACTGGACGACGACGACGAGTGCTCGGGTCAAGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAACTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGCAAAGGTTCAACATTGTTCACATAACAGTACATTCTCGAAACGAAGGAGGCAATTCTAA 891 47.25 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALEPTDPVPCSSMAKSHSREKSTETKVRPLPEREFSMPSPGELSRSLSVQGGSEDFMANRMLLTGDSVSGGFSQWQMDELINLTGFSQNYGYMDNGSSKADSGKLGDSDSSPILRAADVELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRTYHNSMDGAVFVPDISCSSAKVQHCSHNSTFSKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8736266 8739180 - Tan0019893.1 Tan01g0919 738343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0919 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Tan01g0919 296 FunFam B-box zinc finger protein 22 1 93 - -
Tan01g0919 296 Gene3D Classic Zinc Finger 1 92 - -
Tan01g0919 296 MobiDBLite consensus disorder prediction 113 152 - -
Tan01g0919 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Tan01g0919 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 MobiDBLite consensus disorder prediction 121 135 - -
Tan01g0919 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan01g0919 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0919 Tan-Chr1:8736266 Tan06g1564 Tan-Chr6:24504335 6.00E-35 dispersed
Tan01g4472 Tan-Chr1:110136871 Tan01g0919 Tan-Chr1:8736266 4.20E-06 dispersed
Tan01g0919 Tan-Chr1:8736266 Tan02g2035 Tan-Chr2:89736909 9.00E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26305 PF00643 zf-B_box 3.20E-07 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0919 - - - 0.0