Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0948 ATGCTATTGGGTTTTCTGTTTCCTACTTGTCTTGATTACTTTCTTGCTCCACCCTTCAGGGCATATCGTTATTTCACGTCAAGCAGCAGCATGGGGCTGCGTTTTTTGTCATACCCACAGAGGAATTTGCTGATGAAGTTCTCATCTCTGCCCCCAGTAACTGCAATTGCCAGCTTCAAAAATGTCAAAGGGGCTTTCCCTTACAGGCGTGTTAGTTGTCAATTGAACTTGGATGATTCCAGCAGCAAGAACAGCCAGATGGAAAGAGTTTACTCCACCATTTCAAATGGGAAATTTAGCAATAAAGAGTTTATTAGTGTTGACTCGCGGCTTTATGAGTATATTCTCTCCAATGTTCGAGAGCCTGAGATCCTGGGGCAACTTCGCGAGGAGACCGCCTCATTGCGTGGTAGCAAAATGCAGGTATCTCCTGATCAAGCACAACTTCTTGCAATGCTTGTTCAGATTCTTGGTGCAAAGCGGTGCATTGAAGTGGGTGTTTACACTGGATATTCGTCCTTAGCTGTTGCACTTGTCCTTCCAGAGTCAGGGCGTTTAGTTGCCTGTGAAAGAGATGCCATATATCTCGAGGTTGCTAAAAGATATTATGAACTTGCTGGTGTTTCACACAAAGTGGATGTGAGACTTGGGCTTGCAGCAGATACACTCAAATCACTTATTGCAAATGGTGAAGCTTGCAGCTATGACTTTGCCTTCATCGATGCTGAGAAGAGGATGAATGAGGAATACTTCGAACTGCTACTGCAACTGGTGAGGGTTGGAGGTTTAATTGTGATTGACAATGTCCTTTGGTACGGAAAAGTAGCTGACTCGACGGTAAATGACAAGAAGACTGATAGCATTAGGAGATTGAATAAAAGGATAATGGAAGATGATCGAGTCAGGATCAGTATGGTACCCATTGGAGATGGCATGACAATTTGCCAAAAGAGATGA 957 43.78 MLLGFLFPTCLDYFLAPPFRAYRYFTSSSSMGLRFLSYPQRNLLMKFSSLPPVTAIASFKNVKGAFPYRRVSCQLNLDDSSSKNSQMERVYSTISNGKFSNKEFISVDSRLYEYILSNVREPEILGQLREETASLRGSKMQVSPDQAQLLAMLVQILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACERDAIYLEVAKRYYELAGVSHKVDVRLGLAADTLKSLIANGEACSYDFAFIDAEKRMNEEYFELLLQLVRVGGLIVIDNVLWYGKVADSTVNDKKTDSIRRLNKRIMEDDRVRISMVPIGDGMTICQKR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9138788 9144016 + Tan0000906.3 Tan01g0948 738372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0948 318 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 101 318 IPR002935 GO:0008171(InterPro)
Tan01g0948 318 Pfam O-methyltransferase 119 317 IPR002935 GO:0008171(InterPro)
Tan01g0948 318 CDD AdoMet_MTases 161 266 - -
Tan01g0948 318 Gene3D Vaccinia Virus protein VP39 92 318 IPR029063 -
Tan01g0948 318 PANTHER O-METHYLTRANSFERASE-RELATED 105 317 IPR050362 GO:0008757(PANTHER)
Tan01g0948 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 318 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0945 Tan-Chr1:9138611 Tan01g0948 Tan-Chr1:9138788 2.90E-159 dispersed
Tan01g0946 Tan-Chr1:9138611 Tan01g0948 Tan-Chr1:9138788 7.00E-156 dispersed
Tan01g0948 Tan-Chr1:9138788 Tan04g0054 Tan-Chr4:483406 5.80E-36 dispersed
Tan01g0947 Tan-Chr1:9138611 Tan01g0948 Tan-Chr1:9138788 1.00E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0948 - - - 0.0