Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0953 ATGGAGGACGATTACTCCATCTTCCCTCCCGATTCAGATCTCGACTTCAGTTTCACCTCCACCGCCACTGACCGCACCTTCACCTCCTCCAGCGCCCGCAGCAGCCTTGCCCGAACTAGCCTAACTCTCAGCTTCAATGAGTCCCGTCTTTCCTCCGCCGTTAACCTCCGTCCCCACCGCCACTCCGACCCACACTGGTCCGCCATCAAAGCCGCCACTACTCTCTCCTCAGACGGCCATCTCCACCTCCGCCACCTCAAACTCATCCGCCACCTCGGCACCGGCAACCTCGGCCGTGTCTTCCTCTGCCATTTGAGAGACAACGACCATGCCAGTTTCGCCCTCAAGGTCGTCGACAGAGAGGCGTTGAGCAACAAGAAGCTTTTGCAGGTTCAAACGGAAGCCGAGATTCTCTCTTTGCTGGACCACCCTTTTCTCCCCACTCTCTACGCGCGTCTCGACGTCTCTCACTACACGTGCCTTCTTATCGACTATTGCCCCGCCGGCGACCTCCACTCTCTCCTCCGCAAACACCCCGGAAGCCGCCTCTCCGTCTCGGCGGCCAGATTCTTCGCCGCCGAGGTTCTGGTGGCTCTTGAGTACCTTCACGCGCTTGGCATCGTGTACCGGGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCTCGGACTTCGACTTGTGCTTTAAGTCCGACGTGGTCCCCACTTTTCACACGTGGACGCGTCGGGGACCACCGGGTACTGCCGGCGGCTGCTTTGGGTTAAAGACGGCGGCGGCGGCGGAGGAGATTGTCGGAGAGTTTGTGGCGGAGCCGACGGCGGCGTTTTCCAAGTCGTGTGTGGGGACTCATGAGTATTTGGCGCCGGAGTTGGTGGCCGGCGGTGGCCACGGTAATGGCGTCGACTGGTGGGCGTTTGGGGTGTTTATTTACGAGCTGCTGCACGGGACGACGCCGTTTAAGGGAGTGAACAAGGAGGGTACGCTGAGGAATATTGCGTTGTCGGAGGGAGTGAAGTTCCGGGCCGCGGCGGCGGCGGCAGCGGAGGAAGAGGAGGGGATGGCAGAGGCGAGGGATCTGATAGAGAGGCTGCTGGTGAAGGATCCGGCGAGGCGGCTGGGTTCCAGCAAAGGGGCGACAGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAGTGGCCGTTGATCCGGACGTACCGGCCGCCGGAGGTGTATGGGCTCACGAAAAAGGCCAGATCGCACGTGAGCCACGTGACTGGCGTCACCCACCGCATGCGGCGGCGGGGTTGGTGGAACTGGAGGAAGCTCAGTAACTGTTTAATTAAAAATGGAAATTCCAGTAAATCTCATAGCAATACCAATTATTACAGTTATAGCGCCAAAAATAAGAAGGGTTAA 1413 58.81 MEDDYSIFPPDSDLDFSFTSTATDRTFTSSSARSSLARTSLTLSFNESRLSSAVNLRPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDREALSNKKLLQVQTEAEILSLLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKHPGSRLSVSAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRRGPPGTAGGCFGLKTAAAAEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVAGGGHGNGVDWWAFGVFIYELLHGTTPFKGVNKEGTLRNIALSEGVKFRAAAAAAAEEEEGMAEARDLIERLLVKDPARRLGSSKGATEIKRHPFFDGIKWPLIRTYRPPEVYGLTKKARSHVSHVTGVTHRMRRRGWWNWRKLSNCLIKNGNSSKSHSNTNYYSYSAKNKKG 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9231667 9233305 - Tan0019938.1 Tan01g0953 738377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0953 470 SMART serkin_6 86 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0953 470 Gene3D Phosphorylase Kinase; domain 1 85 169 - -
Tan01g0953 470 Coils Coil 352 372 - -
Tan01g0953 470 FunFam Serine/threonine-protein kinase OXI1 280 411 - -
Tan01g0953 470 Gene3D Transferase(Phosphotransferase) domain 1 170 237 - -
Tan01g0953 470 FunFam Serine/threonine-protein kinase OXI1 170 237 - -
Tan01g0953 470 Gene3D Transferase(Phosphotransferase) domain 1 282 409 - -
Tan01g0953 470 CDD STKc_phototropin_like 84 409 - -
Tan01g0953 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0953 470 Pfam Protein kinase domain 282 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0953 470 Pfam Protein kinase domain 88 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0953 470 ProSiteProfiles Protein kinase domain profile. 86 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0953 470 SUPERFAMILY Protein kinase-like (PK-like) 84 460 IPR011009 -
Tan01g0953 470 PANTHER FLIPPASE KINASE 1-RELATED 37 413 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0953 Tan-Chr1:9231667 Tan05g2687 Tan-Chr5:78551388 2.20E-92 dispersed
Tan01g0953 Tan-Chr1:9231667 Tan03g1186 Tan-Chr3:68168131 1.70E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67005 PF00069 Pkinase 7.20E-53 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0953 - - - 0.0