Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0962 ATGACTTGCTTCCCTTTTTTGTTCAGTAAGAGGGTGAAACCTCCAAGAAGAAGTTTTGTTGAGGACGAAGAATTTTCAGGCATGCACAATGTTAGATTTTACACATACAAAGAGCTAAAATTTGCAACTGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGCGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAGAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAATCAAGACAAGGATTGAAGGAATTCTTGACAGAAATAAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACTCTTCTCGGGCGAGGCTACAGTAGCATCCAGTTTGATTGGCGAACAAGGTCTAAGATTTGCGTTGGAATTGCACGGGGGCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATTCATAGAGATATCAAAGCAAGTAACATTCTTCTTGACCGTGACCTCACTCCTAAAATTTCAGATTTTGGTCTCGCGAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACCCGAGTGGCAGGAACAATTGGCTACCTGGCACCAGAATATGCAATAAGAGGGCAGGTGACGAGAAAATCAGATATTTACAGTTTCGGGGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAATACAAATACGCAGTTACCAATTGGAGAGCAATACCTTCTCGAAAGGACATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTAGTAGATATGTCGTTAAACGGCGACTTTGATGCTGAGGAGGCTTGTAAATATCTAAAGATTGGCCTACTTTGCACGCAAGACAGTCCGAAGCTCCGTCCATCAATGTCGACTGTGGTAAAGATGCTAACGGGCGAGATCAGTATCGAAGATAGAAAGATAACGAAACCGGGGCTGATTTCTGACTTCATGGATCTTAAAGTAAAGATTCCAGAGAAAAAGAAAGGGAATGGAGAGGGAGTATCTTCTGATAGTCTGTCCTCTGGATCAAACATCCTTGGAAACTCAACAATGTCATCTGAAACCTCAACTATTACAACTGCAACCTTCACTGCACAATATGACAGGAACACTTTCTCATCTGTACTGTGA 1194 42.63 MTCFPFLFSKRVKPPRRSFVEDEEFSGMHNVRFYTYKELKFATEDFSLANKIGEGGFGSVYKGKLRDGKIAAIKVLSAESRQGLKEFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFDWRTRSKICVGIARGLAFLHEDVQPHIIHRDIKASNILLDRDLTPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDMSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEISIEDRKITKPGLISDFMDLKVKIPEKKKGNGEGVSSDSLSSGSNILGNSTMSSETSTITTATFTAQYDRNTFSSVL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9379165 9383535 - Tan0006537.1 Tan01g0962 738386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0962 397 FunFam cold-responsive protein kinase 1 122 333 - -
Tan01g0962 397 SMART serkin_6 46 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0962 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0962 397 MobiDBLite consensus disorder prediction 354 372 - -
Tan01g0962 397 CDD STKc_IRAK 52 319 - -
Tan01g0962 397 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524(InterPro)
Tan01g0962 397 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Tan01g0962 397 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 350 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Tan01g0962 397 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0962 397 Pfam Protein kinase domain 48 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0962 397 MobiDBLite consensus disorder prediction 348 372 - -
Tan01g0962 397 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Tan01g0962 397 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Tan01g0962 397 FunFam cold-responsive protein kinase 1 17 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0872 Tan-Chr1:8365728 Tan01g0962 Tan-Chr1:9379165 6.60E-133 dispersed
Tan01g0962 Tan-Chr1:9379165 Tan03g1053 Tan-Chr3:66800024 1.00E-98 dispersed
Tan07g0662 Tan-Chr7:10372147 Tan01g0962 Tan-Chr1:9379165 3.00E-23 dispersed
Tan10g0362 Tan-Chr10:2940794 Tan01g0962 Tan-Chr1:9379165 1.40E-47 dispersed
Tan01g0962 Tan-Chr1:9379165 Tan01g0963 Tan-Chr1:9379165 3.20E-209 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67006 PF00069 Pkinase 1.80E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0962 - - - 0.0