Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0990 ATGCTACGCAGCTTAATCCCTCATTCCCCCATCAATTCCACTTCCAATTCCCACCCCAATTCCATGAAGTCCAAGCGCTCCACCGACCCCGACTCCTCCGCCGACGACCCTTCCTCCAAGCGTCTCAATTCTTCTTTCTCCAACTTCGACGCCGGAGAGAAGGCCGTCGAGGAGGACGACGACGAGGAAGAACAGCCCCCGCTTCTCGAGGGGAGCGAGTCCACTGGTTTGAGACTGCTGGGGCTTCTTCTTCAATGCGCCGAGTGCGTCGCCATGGATAATCTCCAGGAAGCGAACGATCTCTTGCCGGAGATCTCCGAGCTCTCCTCGCCGTTCGGGACCTCGCCTGAGCGCGTCGGCGCGTACTTCGCCCACGCGCTTCAGGCTAGAGTGATAAGTTCCTGCTTGGGAACTTACTCGCCCTTGACGATCAGAACGCTGAATCAATCACAGTCGCAGAGGATGTTCAATGCTCTGCAATCCTACAATTCGATCAGTCCGTTGATCAAGTTCTCTCACTTCACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGCGAAGATCGAGTCCACGTTATCGACCTTGACGTAATGCAAGGTCTCCAATGGCCTGGATTATTCCACATCCTTGCCTCCCGCCCTAAGAAAATCCAATCGCTCCGAATCTCGGGCTTCGGATCCTCCTCCGATTTACTCCAATCGACCGGGCGGAGACTGGCCGATTTCGCAACCTCCCTCGGGCTCCCATTCGAGTTCCATCCAGTGGAAGGAAAGATCGGAAACCTAACGGAGCCAAAGCAACTGGAATTACGTGCCGGCGAGGCGGTGGTGGTTCACTGGATGCACCATTGCTTGTACGACATAACCGGGAGCGATTTAGGAACGGTGAGGGTACTTTCAAGTCTGAAACCAAAACTGATCAGCATCGTGGAACAGGATTTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTGGAGGCTCTGCATTATTACAGCGCGTTGTTCGACGCGCTTGGAGATAGTTTAGCCATGGATAGCGTGGAAAGGCATGTGGTGGAGCAGCAATTGTTTGGATGTGAGATTAGGAACATTATCGCCGTCGGTGGACCCAAAAGAACCGGCGAAGTGAAGGTGGAGAGATGGGGAGATGAACTGAAACGGGTCGGATTCCGACCCGTTTCTCTGAGTGGAAACCCGGCAGCTCAGGCGAGTTTGCTTCTGGGAATGTTCCCATGGAAAGGGTATACTCTGGTTGAAGAAAATGGGTGCCTTAAACTTGGATGGAAGGATCTTTCTCTTCTCACAGCCTCCGCCTGGCAACCCTCTGACTACTGA 1335 53.93 MLRSLIPHSPINSTSNSHPNSMKSKRSTDPDSSADDPSSKRLNSSFSNFDAGEKAVEEDDDEEEQPPLLEGSESTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQSQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSDLLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTEPKQLELRAGEAVVVHWMHHCLYDITGSDLGTVRVLSSLKPKLISIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSVERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSDY 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9625374 9627675 + Tan0002163.1 Tan01g0990 738414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0990 444 Pfam GRAS domain family 81 440 IPR005202 -
Tan01g0990 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 439 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Tan01g0990 444 MobiDBLite consensus disorder prediction 7 23 - -
Tan01g0990 444 MobiDBLite consensus disorder prediction 54 68 - -
Tan01g0990 444 ProSiteProfiles GRAS family profile. 70 440 IPR005202 -
Tan01g0990 444 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0990 Tan-Chr1:9625374 Tan03g0654 Tan-Chr3:62042939 3.60E-132 dispersed
Tan01g0990 Tan-Chr1:9625374 Tan08g2009 Tan-Chr8:72165090 2.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26308 PF03514 GRAS 2.50E-115 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0990 K27742 - csv:101212169 748.814