Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1010 ATGAATATTATCAATACTAATCTCCTCACCAACATTGCTCTCTCTTCTCTCATCCCTCTCCTTGCTTTCCTCCTCATCAATCCCGCCCCTCGCTTTCTCTCCGACCTCGTCATCCTCGACTTCACCTTCCTCCGTGACTCCCTTGACTGCCATCATCATCACAAAAGCTCGACGGATGAAGAAGATCAAACAACTATCAGTTCCATTTGCGAAACGTTCCCAGCCAACCTTCTCCCACCAGAAACTAGTAACACTTCTGTCTTTTGCGTCGATCGAAACGGTTGTTGCAACTTCACGACAGTTCAGGCTGCGGTCGACGCTGTGCCGAACTTGAGTCCAAAACGAAGCGTGATATGGATCAACAGTGGAATCTACTTTGAGAAAGTGATGGTTCCAAGATCAAAACCGAACGTGACATTTCAAGGACAAGGCTACACAACCACGGCCATTGTTTGGAATGACACAGCCAACTCTTCGCATGGGACCTTTTACAGTGGCTCTGTCCAAGTCTTCTCTACCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCACAGGCGGTGGCGATCAGAATCGGCGGCGACCAGGCGGCGTTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGACGACCGCGGTCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGCAATGGAAGATCCTTCTACGAGAGTTGCCAGTTGCTATCGATGGCGAATCCGGTGCCGCAAGGATCGAAGTTCATAAACGGAGCAGTGACGGCGCACGGCAGAGCCTCCGCCGACGAGAACTCTGGATTTGTTTTTGTTAATTGCAGTATCGGCGGGACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTCGCCAACACCGTTATGACGGACATTATTGCGTCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGAGACCAGACGATTTTCTATGGAGAGTATAACTCCAGTGGAACAGGAGCCAATATGACTGCAAGGCCTCCCTTTGTTCAGAGGCTGAATGATACACAAGTTTCTCCCTTCCTCAACTTGTCCTTCATTGATGCAGATCAATGGCTGCAACCCTATTCATCTATTTAA 1176 50.6 MNIINTNLLTNIALSSLIPLLAFLLINPAPRFLSDLVILDFTFLRDSLDCHHHHKSSTDEEDQTTISSICETFPANLLPPETSNTSVFCVDRNGCCNFTTVQAAVDAVPNLSPKRSVIWINSGIYFEKVMVPRSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSTNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLLSMANPVPQGSKFINGAVTAHGRASADENSGFVFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPARDQTIFYGEYNSSGTGANMTARPPFVQRLNDTQVSPFLNLSFIDADQWLQPYSSI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9767410 9771073 + Tan0019181.1 Tan01g1010 738434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1010 391 Gene3D - 82 390 IPR012334 -
Tan01g1010 391 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Tan01g1010 391 FunFam Pectinesterase 82 390 - -
Tan01g1010 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 386 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Tan01g1010 391 SUPERFAMILY Pectin lyase-like 87 388 IPR011050 -
Tan01g1010 391 Pfam Pectinesterase 90 381 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1010 Tan-Chr1:9767410 Tan08g1824 Tan-Chr8:70226162 4.60E-99 dispersed
Tan01g1010 Tan-Chr1:9767410 Tan02g1980 Tan-Chr2:88702693 2.40E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1010 - - - 0.0