Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1029 ATGGGATCCAGTGGGAGTAAATCGTCGAGCAGTTCGCTGCCGTCGCCGTCTTCGTCGGCGGCGGCTCTGTCGTGTTCCGGGAGAATCCGGAGGGGGAGATCCAAAGGCCGGAGAGTTTTCCAGTCTGCTTGCCTTGGTTCGCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTGTGAAAGTGAGAGCAAAAAGAATGCTCATGATTATTCATCTGCAAATCAGACTGCTCAAGCGTTATATCAGATGAAAATTGAGGGTTACAGAAGGGTCAAAGCTGAGGAATCTGTTGAAGTGCCTTGCATATCGTCGAATGTTGAGCTTGATGGATGGGATCAAGCAGGTGTTGCAGTTACAACCCCTAGAGCTGGAAGTACCTCTGCTCATGCATCATCCCTTCAATCGTTGAACCCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTAAGCTTCAGACTGAGTAGAGCAAGCAGTTTAGGATCTTCAAGATCTTATCCTGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCTTCATTTATCGAACAGACCTTCTAGAGGCTTGGGTGATCGAGATGAAACTCAGCAAGATAGGGACTCACTTCCTGCGTCACTAGCTAGTGCAACTCATACTCAATGTCATGGAGTTGGTCCAGCTAATTTTAGGTTAAATACACAACCTTCTGGTCTTTCTGATAACTTACAAGAGAATCAGGCAGTTTCTTCTACCCATGACATGGCTGGTGATTGTGATATTGCAAGAGTGGAGCCTGATGGAAACCTTTCCCATCCACGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGAGAATCTGACAGACGGACTGGATCCAGGGAACCGGTTGAACGCAATTTTCTTTTCAGCCGGACCCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCGTTATCTGACTTCACCTTTTGTCCTCAACAACAAGAGGGAGATGAAAGAGATGCTAGTCAGAGTGGTGATGACCGACATGTCTGGACTGCTGAGACAAGGGCTTTGTCATCTGAAGATAATGCTTTGACCTCCCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCTAGTTCCTTGTTCAACACCCAAGATTATGAAATGGAACCTACCCGACCCGAAGAAGCTAGATATCATGATTTGCTGGAACACCGATCAAATTTCCTCGAACGGAGAAGAAGAATACGTTCCCAGGTTCGTGCCCTTCAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAACATAGAACTGGTCATTGTACTTGTCGTATCAGTAATCGTGAAACAAATATTAATGATAACACCAGTGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGTCTTGCAACTTCGATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTCTATTCCAAGTTGCAAAAGCATCAGAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGAGGAAGGAGATAGGATGAGAATCTTGCCTTGCCATCATGAGTTTCACGCAGCGTGTGTCGACAAGTGGCTAAAGGAAATCCACAGGGTATGCCCACTCTGTCGAGGCGACATATGCAGCTGA 1749 45.63 MGSSGSKSSSSSLPSPSSSAAALSCSGRIRRGRSKGRRVFQSACLGSPSGSHHSDNDDNDCESESKKNAHDYSSANQTAQALYQMKIEGYRRVKAEESVEVPCISSNVELDGWDQAGVAVTTPRAGSTSAHASSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDELHLSNRPSRGLGDRDETQQDRDSLPASLASATHTQCHGVGPANFRLNTQPSGLSDNLQENQAVSSTHDMAGDCDIARVEPDGNLSHPRTLPENESSEIRESDRRTGSREPVERNFLFSRTLSVGRLRDRVLRRSSLSDFTFCPQQQEGDERDASQSGDDRHVWTAETRALSSEDNALTSPTTSGYPASSLSSSLFNTQDYEMEPTRPEEARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRISNRETNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRLATSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDRMRILPCHHEFHAACVDKWLKEIHRVCPLCRGDICS 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10054329 10058170 - Tan0020702.1 Tan01g1029 738453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1029 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 581 IPR013083 -
Tan01g1029 582 FunFam Putative RING zinc finger domain superfamily protein 503 582 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 185 207 - -
Tan01g1029 582 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 581 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 354 378 - -
Tan01g1029 582 SUPERFAMILY RING/U-box 513 580 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 1 75 - -
Tan01g1029 582 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 182 295 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 208 253 - -
Tan01g1029 582 SMART ring_2 535 576 IPR001841 -
Tan01g1029 582 MobiDBLite consensus disorder prediction 278 295 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 1 24 - -
Tan01g1029 582 MobiDBLite consensus disorder prediction 53 69 - -
Tan01g1029 582 Pfam Ring finger domain 534 577 IPR001841 -
Tan01g1029 582 ProSiteProfiles Zinc finger RING-type profile. 535 577 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1029 Tan-Chr1:10054329 Tan09g1506 Tan-Chr9:67096335 7.40E-45 dispersed
Tan01g1029 Tan-Chr1:10054329 Tan01g2327 Tan-Chr1:28097214 1.10E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1029 - - - 0.0