Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1054 ATGATGACAACGATTCCAAGTTTGCTGCCTATGCTTGTCTCGCTGAGAGCAGGTACTTCCAATTCAAATTCTGTGCCGCAAAAGCCGACCGAGAACCACAAGTTTAAGATTCTTCCAGTTGCATCTTCATCGTGGGGACTAATGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCGTCCGACCAGCATGTACTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGCTTGTACTTTCAACTTCCGGTCAACCGTTTGTCCTCGATACACAGAGCAATGGACTTCATCAGTATAGGATGGTCTCTTTGACATACATGTTCTCTTTGGAGACCGACTCGGATGGATATCTTGGGCTACCTGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCACGGCTTAGTCACGCTCTTCACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTTGACCCTTCGGGGCAGTCCTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTCAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGAATATCCAGATTTGCAATGAAGGTCGACAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCAACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGTATGGGACGGATCTGTATGTCTGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACATGTGGGGTTTTCGCGAGGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCATTTTCGTCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGCAAGACTGAATACCCTTTGGTACACTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCATGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACTGAGCATCGTTGATTATCAGGAACAAAAAACTTTGTTGGGTGCATTAATGGCAACAATGAAGCAGCATTTCTACTCTCTCAAAGTTGCTTCCGGAATCAAACTTGAGGAGGAAGGACTTGTCGAGATCGTTCAAGCATCGAGAAATGGAGGGTTTGAGTCTAGACTTGAATATATTCAAATTCCCCGAACCATGGAATTGCCACCTGGGGCTGATGCCATGCCGAAAGCAGGAGAGGTAATTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCCCCAAAGGACGAAAACAATACTGCTCGGGATGGGGAAAGCCACAACCCCGTTCCTTGTGCACAGAATAAGGAAGTAAAAAAGACGTCAGAAAGGAAGCGTGGAAAAGCTGAGAAATCAATCAGCCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTCGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAATCGCTCTCTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATATCTTCTTTGGCTACAAGTCCACTTCCTGTTACTGTTAGTTCGAGTTCACATCCTTTAACTCCAGACGGGTCTAATCAGCAAAACGTTGTTGCTTCTCAACCCTCTGATTCTCAACATAAAGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGACTGGAAGATCAATTGCATCGGGGAGTGTTGAGTCCGGAAGAACCGGTTCACGAGCAGAACGGATTTTTTCCGAAGCTTGGAAATGGTTTGAACAATTTTAAAACACGGAGTGGATCACGGGAAGAGAGCATTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGACAGTGCGCTAGCAAATAATCCCATTTCTATTCCCCACCAAGAACAATGTGTAAGAAGAGAATCTCCTGAAGCAGCATTCCATCCAATCGATCAACTGAATATATCGGCACCTGCTTGTTCAATCCCAGATACACTTGTGATGGTTGAGCCCGAGGAACCATTTGGAGGAATGCTAATTGAGGATGCAGGAAGTTCTAAGGACTTAAAAAACCTTTGCGCTTCTGTCGCTGATGCTGTTCTTGACGAGCAAGTACCCGAATTTTGTTGGCCTAACCCTCCTGATATGGCTCTGAGACAACCTATGGACTCTGTTTGTCAAACAGTCCCTCATATATCAGCTAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACGTATAAGGAAGATATCATTCGGTTTCGGATTTCCATGAGTTCTGGTATTGTGGAGTTAAGAGAAGAAGTAGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATAAAATACATGGACGACGATCGGGAATGGGTTCTTATTGCCTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAATCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTTAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 2760 44.53 MMTTIPSLLPMLVSLRAGTSNSNSVPQKPTENHKFKILPVASSSWGLMPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFVLDTQSNGLHQYRMVSLTYMFSLETDSDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTSPKINYAPEVDKVCKALQAVNLKSSEILDHPNIQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSMFTGDDEYILEFFLPLSIVDYQEQKTLLGALMATMKQHFYSLKVASGIKLEEEGLVEIVQASRNGGFESRLEYIQIPRTMELPPGADAMPKAGEVIALETLQQQSLMVHDAPKDENNTARDGESHNPVPCAQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPDGSNQQNVVASQPSDSQHKETNTSEAQTNDTQARLEDQLHRGVLSPEEPVHEQNGFFPKLGNGLNNFKTRSGSREESIGTPTSHGSCQGSPANDSALANNPISIPHQEQCVRRESPEAAFHPIDQLNISAPACSIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWPNPPDMALRQPMDSVCQTVPHISARQEPRRMTIKATYKEDIIRFRISMSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLLVHDLSVNLGSSCESTGE 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10338847 10343756 - Tan0015711.1 Tan01g1054 738478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1054 919 MobiDBLite consensus disorder prediction 600 642 - -
Tan01g1054 919 MobiDBLite consensus disorder prediction 675 701 - -
Tan01g1054 919 SUPERFAMILY CAD & PB1 domains 817 907 - -
Tan01g1054 919 FunFam RWP-RK domain-containing protein 821 905 - -
Tan01g1054 919 SMART PB1_new 824 906 IPR000270 GO:0005515(InterPro)
Tan01g1054 919 ProSiteProfiles PB1 domain profile. 824 906 IPR053793 -
Tan01g1054 919 Pfam RWP-RK domain 519 566 IPR003035 -
Tan01g1054 919 ProSiteProfiles RWP-RK domain profile. 506 587 IPR003035 -
Tan01g1054 919 Pfam PB1 domain 825 905 IPR000270 GO:0005515(InterPro)
Tan01g1054 919 PANTHER PROTEIN NLP8 36 918 IPR045012 GO:0003700(InterPro)
Tan01g1054 919 Gene3D - 822 905 - -
Tan01g1054 919 CDD PB1_NLP 825 905 IPR034891 -
Tan01g1054 919 Pfam NLP protein GAF domain 228 411 IPR055081 -
Tan01g1054 919 Pfam NLP protein GAF domain 77 212 IPR055081 -
Tan01g1054 919 MobiDBLite consensus disorder prediction 481 517 - -
Tan01g1054 919 MobiDBLite consensus disorder prediction 654 701 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1054 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1054 Tan-Chr1:10338847 Tan01g5105 Tan-Chr1:116440500 1.70E-128 dispersed
Tan01g1054 Tan-Chr1:10338847 Tan01g1055 Tan-Chr1:10338847 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1054 . 114 919 NLP Transcription Factor Family AT1G64530 51.7 5.2e-215 745.0
Tan01g1055 . 114 905 NLP Transcription Factor Family AT1G64530 51.2 9.5e-209 724.2
Tan01g1054 . 193 919 NLP Transcription Factor Family AT4G24020 54.6 8.5e-202 701.0
Tan01g1055 . 193 904 NLP Transcription Factor Family AT4G24020 53.3 6.8e-191 664.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26322 PF00564 PB1 9.40E-20 CL0072 Tan TF