Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1055 ATGATGACAACGATTCCAAGTTTGCTGCCTATGCTTGTCTCGCTGAGAGCAGGTACTTCCAATTCAAATTCTGTGCCGCAAAAGCCGACCGAGAACCACAAGTTTAAGATTCTTCCAGTTGCATCTTCATCGTGGGGACTAATGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCGTCCGACCAGCATGTACTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGCTTGTACTTTCAACTTCCGGTCAACCGTTTGTCCTCGATACACAGAGCAATGGACTTCATCAGTATAGGATGGTCTCTTTGACATACATGTTCTCTTTGGAGACCGACTCGGATGGATATCTTGGGCTACCTGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCACGGCTTAGTCACGCTCTTCACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTTGACCCTTCGGGGCAGTCCTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTCAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGAATATCCAGATTTGCAATGAAGGTCGACAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCAACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGTATGGGACGGATCTGTATGTCTGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACATGTGGGGTTTTCGCGAGGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCATTTTCGTCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGCAAGACTGAATACCCTTTGGTACACTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCATGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACTGAGCATCGTTGATTATCAGGAACAAAAAACTTTGTTGGGTGCATTAATGGCAACAATGAAGCAGCATTTCTACTCTCTCAAAGTTGCTTCCGGAATCAAACTTGAGGAGGAAGGACTTGTCGAGATCGTTCAAGCATCGAGAAATGGAGGGTTTGAGTCTAGACTTGAATATATTCAAATTCCCCGAACCATGGAATTGCCACCTGGGGCTGATGCCATGCCGAAAGCAGGAGAGGTAATTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCCCCAAAGGACGAAAACAATACTGCTCGGGATGGGGAAAGCCACAACCCCGTTCCTTGTGCACAGAATAAGGAAGTAAAAAAGACGTCAGAAAGGAAGCGTGGAAAAGCTGAGAAATCAATCAGCCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTCGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAATCGCTCTCTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATATCTTCTTTGGCTACAAGTCCACTTCCTGTTACTGTTAGTTCGAGTTCACATCCTTTAACTCCAGACGGGTCTAATCAGCAAAACGTTGTTGCTTCTCAACCCTCTGATTCTCAACATAAAGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGACTGGAAGATCAATTGCATCGGGGAGTGTTGAGTCCGGAAGAACCGGTTCACGAGCAGAACGGATTTTTTCCGAAGCTTGGAAATGGTTTGAACAATTTTAAAACACGGAGTGGATCACGGGAAGAGAGCATTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGACAGTGCGCTAGCAAATAATCCCATTTCTATTCCCCACCAAGAACAATGTGTAAGAAGAGAATCTCCTGAAGCAGCATTCCATCCAATCGATCAACTGAATATATCGGCACCTGCTTGTTCAATCCCAGATACACTTGTGATGGTTGAGCCCGAGGAACCATTTGGAGGAATGCTAATTGAGGATGCAGGAAGTTCTAAGGACTTAAAAAACCTTTGCGCTTCTGTCGCTGATGCTGTTCTTGACGAGCAAGTACCCGAATTTTGTTGGCCTAACCCTCCTGATATGGCTCTGAGACAACCTATGGACTCTGTTTGTCAAACAGTCCCTCATATATCAGCTAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACGTATAAGGAAGATATCATTCGGTTTCGGATTTCCATGAGTTCTGGTATTGTGGAGTTAAGAGAAGAAGTAGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATAAAATACATGGACGACGATCGGGAATGGGTTCTTATTGCCTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAATCATCAGTGATTCTCCTCATTTTGAATGCAATCACCTTCTTCTCTGTCAAACACGATCTTCAGAGGTGGTGGGTTGAGTTTAAAGATTGA 2766 44.58 MMTTIPSLLPMLVSLRAGTSNSNSVPQKPTENHKFKILPVASSSWGLMPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFVLDTQSNGLHQYRMVSLTYMFSLETDSDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTSPKINYAPEVDKVCKALQAVNLKSSEILDHPNIQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSMFTGDDEYILEFFLPLSIVDYQEQKTLLGALMATMKQHFYSLKVASGIKLEEEGLVEIVQASRNGGFESRLEYIQIPRTMELPPGADAMPKAGEVIALETLQQQSLMVHDAPKDENNTARDGESHNPVPCAQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPDGSNQQNVVASQPSDSQHKETNTSEAQTNDTQARLEDQLHRGVLSPEEPVHEQNGFFPKLGNGLNNFKTRSGSREESIGTPTSHGSCQGSPANDSALANNPISIPHQEQCVRRESPEAAFHPIDQLNISAPACSIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWPNPPDMALRQPMDSVCQTVPHISARQEPRRMTIKATYKEDIIRFRISMSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSVILLILNAITFFSVKHDLQRWWVEFKD 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10338847 10343756 - Tan0015711.2 Tan01g1055 738479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1055 921 MobiDBLite consensus disorder prediction 600 642 - -
Tan01g1055 921 MobiDBLite consensus disorder prediction 675 701 - -
Tan01g1055 921 Pfam PB1 domain 825 894 IPR000270 GO:0005515(InterPro)
Tan01g1055 921 Pfam NLP protein GAF domain 228 411 IPR055081 -
Tan01g1055 921 Pfam NLP protein GAF domain 77 212 IPR055081 -
Tan01g1055 921 PANTHER PROTEIN NLP8 36 896 IPR045012 GO:0003700(InterPro)
Tan01g1055 921 CDD PB1_NLP 825 894 IPR034891 -
Tan01g1055 921 SUPERFAMILY CAD & PB1 domains 817 893 - -
Tan01g1055 921 ProSiteProfiles PB1 domain profile. 824 902 IPR053793 -
Tan01g1055 921 SMART PB1_new 824 903 IPR000270 GO:0005515(InterPro)
Tan01g1055 921 ProSiteProfiles RWP-RK domain profile. 506 587 IPR003035 -
Tan01g1055 921 Pfam RWP-RK domain 519 566 IPR003035 -
Tan01g1055 921 MobiDBLite consensus disorder prediction 481 517 - -
Tan01g1055 921 MobiDBLite consensus disorder prediction 654 701 - -
Tan01g1055 921 Gene3D - 822 901 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1055 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1055 Tan-Chr1:10338847 Tan01g5105 Tan-Chr1:116440500 1.10E-127 dispersed
Tan01g1054 Tan-Chr1:10338847 Tan01g1055 Tan-Chr1:10338847 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1054 . 114 919 NLP Transcription Factor Family AT1G64530 51.7 5.2e-215 745.0
Tan01g1055 . 114 905 NLP Transcription Factor Family AT1G64530 51.2 9.5e-209 724.2
Tan01g1054 . 193 919 NLP Transcription Factor Family AT4G24020 54.6 8.5e-202 701.0
Tan01g1055 . 193 904 NLP Transcription Factor Family AT4G24020 53.3 6.8e-191 664.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26323 PF00564 PB1 8.00E-17 CL0072 Tan TF