Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1062 ATGGCTAATCTGGGAGGAGGGTCGTTTTCACCCTCAAATGTTTCGCCTCAAGGTTGGGGAGGAGACGGCCTTTACACTGAGCTATGGAAGGCCTCAGCTGGGCCTCTTGTGGAAGTTCCTCGAGTTCATGAGAAGGTTTTCTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTCGTTTAATCTTTCCTCCAAAATTCTCTGTCATGTAGTTGATGTCCGGCTGCTGGCGGAGAAGGAAACAGATGAGGTTTATGCACAGATAGCTTTAATGCCAGAAGCAAATCAAGAGGAACCTACAAGTCCTGATCCTTCACCCCCAGAGTGTCGAAAACCAAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTTCGCAAACATGCCACGGAATGCCTACCTCCATTGGATATGACCCAGCAGACCCCGACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTACGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGATTAGTTGCTGGAGACTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTACGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAAAGCAGTATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTGGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTCGTCTATTATAAGCCAAGGGCGAGCCAGTTTATCGTCAGCTTAAATAAGTATATAGAAGCGATGAACAGTAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGCACGATAATTGGAGTTGACGACATATCTCCTCACTGGCCTAATTCAAAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTGTTCAGAGACCTGAGAGGGTTTCACCGTGGGAAATTGAACCTTTTGTGGCTCCTATGTCCCCAAGCATTCCACAATCAGTTTCGGTAAAGAATAAAAGGCCTCGCCCTCCACTCGACATACCAGATTCTGATAATTCAACCGTGACAACTCTTCGACATCCAGGATCAACTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGACATTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACAGATATTAGCAGCAATGGGAATTCCATATCAAGGACTCCGATCGAGGGTTCTTGGTTAAATTCCCTGAATGGAAGTGTTTCTCAGCATCGGTTACAAGATTTGACAGAGGACCGTAAAAGTAATTCTGTTTGGTCAACAGTCTTCCCAGGAGCACCAACAGCACACTCGACATGTCCAACTCCACGTCCACCAAATCCGAAGAGTGACCAAATAAATAACCTTGGGGAAAAGGGGAGGAAAACTGAGGTAGCTCCAAGCTGTCGCTTATTTGGGATCGAGCTCATTAATCATTCTAAGAGTCCAGTTCCACCTGAAAGGGCACCTGACCAACCGATTAGCGTACCGAACGAAATTACTGAAAGCCATGTCAACACCTTACTATCATCTGCAGAGCAGAACTCAGACCTGCCAAAGGCTTCAAAAGAAAGAAAATTGGGACTTCTACAAGCACCCCCTAAAGAGATCCAGCACAAGCAGAACGGCTCGACCAACAGCCGAAGCCGTACCAAGGTTCAAATGCAAGGAATGGCTGTTGGACGTGCTGTGGACCTTACCATGTTGGAAGGGTATGGCCAACTCATTGATGAGCTGGAAAAAATGTTCGATATCAAGGGAGAACTTCGCCCTCGTGATAAGTGGGAGATCGTCTTCACTGATGATGAAGGAGATACGATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAAGATGTGAAGATGAGTTCAGGTAGCAAACTTACGATGTCTACAATCGAATGTGACGGGACAGTAATAACCTCGGAGTCGGCCGAGAGCTGA 2121 46.35 MANLGGGSFSPSNVSPQGWGGDGLYTELWKASAGPLVEVPRVHEKVFYFPQGHMEQLEASTNQELNQKLPSFNLSSKILCHVVDVRLLAEKETDEVYAQIALMPEANQEEPTSPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNSKFLVGMRFKMRFEGEESPERRFSGTIIGVDDISPHWPNSKWRSLRIQWDELASVQRPERVSPWEIEPFVAPMSPSIPQSVSVKNKRPRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSVAAADIKRFENHATWHYKQTDISSNGNSISRTPIEGSWLNSLNGSVSQHRLQDLTEDRKSNSVWSTVFPGAPTAHSTCPTPRPPNPKSDQINNLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERAPDQPISVPNEITESHVNTLLSSAEQNSDLPKASKERKLGLLQAPPKEIQHKQNGSTNSRSRTKVQMQGMAVGRAVDLTMLEGYGQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLTMSTIECDGTVITSESAES 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10454652 10459523 - Tan0001115.1 Tan01g1062 738486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1062 706 Gene3D - 290 361 - -
Tan01g1062 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 682 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan01g1062 706 Pfam AUX/IAA family 642 678 IPR033389 -
Tan01g1062 706 Pfam AUX/IAA family 583 631 IPR033389 -
Tan01g1062 706 Gene3D - 126 230 IPR015300 -
Tan01g1062 706 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Tan01g1062 706 Gene3D - 590 682 - -
Tan01g1062 706 MobiDBLite consensus disorder prediction 384 405 - -
Tan01g1062 706 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Tan01g1062 706 FunFam Auxin response factor 290 361 - -
Tan01g1062 706 FunFam Auxin response factor 127 231 - -
Tan01g1062 706 MobiDBLite consensus disorder prediction 480 506 - -
Tan01g1062 706 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Tan01g1062 706 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Tan01g1062 706 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Tan01g1062 706 SUPERFAMILY CAD & PB1 domains 593 671 - -
Tan01g1062 706 MobiDBLite consensus disorder prediction 365 405 - -
Tan01g1062 706 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan01g1062 706 ProSiteProfiles PB1 domain profile. 595 676 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1062 Tan-Chr1:10454652 Tan11g2197 Tan-Chr11:59274760 2.40E-175 dispersed
Tan05g0270 Tan-Chr5:2048686 Tan01g1062 Tan-Chr1:10454652 2.30E-121 transposed
Tan06g1746 Tan-Chr6:35638917 Tan01g1062 Tan-Chr1:10454652 8.40E-213 transposed
Tan11g0523 Tan-Chr11:4476529 Tan01g1062 Tan-Chr1:10454652 3.50E-102 transposed
Tan01g1062 Tan-Chr1:10454652 Tan07g1529 Tan-Chr7:66539205 1.00E-234 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26324 PF02362 B3 7.00E-22 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1062 K14486 - csv:101213942 1205.66