Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1129 ATGGCGGCGAATGCGACGGTGGCCGGAAGCTGTCCGGCGGCGATGAAAGCGACGTCGAACGGGGTGTTTCAAGGCGACAATCCGCTTGATTTTGCTCTTCCTTTAGCGATTCTTCAGATATGTTTGGTGGTCGTTCTCACTCGTGTTCTTGCTTTGCTTCTCCGACCACTCAGACAGCCTCGAGTCATTGCTGAGATTGTCGGGGGAATATTGCTGGGGCCATCAGCGGTGGGTCGGAGCCAAGAATTTCTTCACAGAGTGTTCCCAGCGAGAAGCCTAACAGTGTTGGACACATTGGCCAATCTTGGTCTTCTCTTCTTCTTGTTTCTGGTTGGCCTCGAGCTTGATCTTAAATCCCTCCGCCAGACCGGAAAGGTCGCAATGGCCATCGCCGTCGCCGGAATCACCCTTCCCTTCGTCCTCGGCATCGGCACCTCCTACATCCTCCGTTCCACCATCTCCCAAGGCGTCCACGGCCCTCCCTTCCTCGTCTTCATGGGCGTCGCTCTTTCCATCACCGCCTTCCCTGTTCTTGCCCGCATCCTTGCCGAGCTCAAGCTCTTAACCACCAACGTCGGTCGCATGGCCATGTCCGCCGCTGCCGTCAATGACGTTGCTGCCTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACCGGCCGCTCCCCTCTCGTCTCCCTCTGGGTTTTCATCTGCGGCTCTGCTTTTGTCCTGTTCTGCTTCTTCACTCTGCCTCCCATCTTCCGCTGGATGTCCCGCCGCTGCTCCAACGGCGAGCCCGTCAGCGAACTCTACATTTGCGCCACCTTATCCATCGTCCTCGCAGCCGGATTCTTCACCGATTTAATCGGAATTCACGCCCTCTTCGGCGCCTTCGTCGTCGGCGTTCTCATCCCAAAAGACGGCCCACTCGCCGGCGCCCTCGTCGAGAAAGTGGAAGACCTCGTCTCGGGTCTCTTCCTCCCTCTGTATTTCGTTTCAAGCGGATTGAAAACCAACATCGCCACCATCAAAGGCGCCCAATCGTGGGGACTCCTCGTCCTCGTGGTTTTCACCGCTTGTTTCGGGAAAATCATCGGCACCATCGCCGTCGCACTCTTCTGCAAAATGCCACTCCAAGAATCCGTCGCCTTGGGATTCTTAATGAACACGAAAGGCCTCGTGGAATTGATCGTCCTGAACATCGGAAAAGACAGAAAAGTTCTGAACGATCAGACTTTTGCAATTCTAGTCCTAATGGCGATCATCACGACGTTCATCACCACCCCAATCGTGATGGCGGTTTACAAGCCGGCGAAGAGGAAGAGCAATTCCGAATACGTGTACAGAACAATCGAGCGAGAGGATCCGAATTCAGAGCTGCGGATTTTGTCCTGTTTTCACTCGGTGAACAACATTCCTTCGATTTTGAATTTGATTGAGGCGTCTCGTGGGACGGAAGGGCGTGGGCGGCGGCTGTGCGTTTATGCGATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCCATTGTTATGGTCCATCGAGCTCGAAAGAATGGGCTGCCGTTTTGGAATAAAGGAGGGAAGTCTGATTCGGATCAAATTGTGGTGGCTTTTGAGGCTTTTCGTCAACTAAGTCGAGTATCTATACGGCCGATGACGGCGATATCTCCGCTCTCTGACATGCATGAAGATGTCTGCAACAGTGCCGAGCGGAAACGAGCAGCCATTATCATCCTCCCATTCCACAAACACCAAAGGTTTGATGGATGTTTGGAGACAACACGGGGCGATTTCCAATGGGTAAATCAAAAAGTTATGGAACAGCCACCTTGCTCCGTTGGGATTTTGGTCGACCGAGGATTCGGAGGTGGTTCTCACATTTGCGCTAGCAACGTCTCTTCCACAGTAACCGTCTTCTTCTTCGGCGGTCGCGACGACCGTGAAGCTCTAGCCTACGGTCGGAGAATGGCAGAGCATCCTGGAATAACCATAAACGTTATCCGCTTCCTTCCCAGTCCCGACATGGCTGTCGAATCCATTGCGGTCGACATTAATGTTTCAGCAGCCATGGATGATGAGAGGGTGTTGTCGGACTTCAACATGAACAAAACAGAGGACGAGTCCGTTAAGTATGAACAGAGGGCAGTGAGCAAAAGCAGCGACGCCATTGAAATAATGAGGGAGTTTAGTAGATGCAATTTGATATTAGTGGGTCAAATGCCAGAAGGGAAAGTAGTGGACAGTTTTCATTTAAAAAGTCTAGAATGTCCGGAGTTGGGTCCAATTGGCAGCTTGTTGACATCATCACTAGAGCTCTCCACCTCAGCTTCCGTGTTGGTGATTCAGCAGTTTCGTGGTCCCTCCTTGTCTTCTTCTTCCACGTCTGCTATGGTATTGCCGGAAGAACTTAATTAA 2400 52.79 MAANATVAGSCPAAMKATSNGVFQGDNPLDFALPLAILQICLVVVLTRVLALLLRPLRQPRVIAEIVGGILLGPSAVGRSQEFLHRVFPARSLTVLDTLANLGLLFFLFLVGLELDLKSLRQTGKVAMAIAVAGITLPFVLGIGTSYILRSTISQGVHGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDVAAWILLALAIALSGTGRSPLVSLWVFICGSAFVLFCFFTLPPIFRWMSRRCSNGEPVSELYICATLSIVLAAGFFTDLIGIHALFGAFVVGVLIPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVFTACFGKIIGTIAVALFCKMPLQESVALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPIVMAVYKPAKRKSNSEYVYRTIEREDPNSELRILSCFHSVNNIPSILNLIEASRGTEGRGRRLCVYAMHLMELTERSSAIVMVHRARKNGLPFWNKGGKSDSDQIVVAFEAFRQLSRVSIRPMTAISPLSDMHEDVCNSAERKRAAIIILPFHKHQRFDGCLETTRGDFQWVNQKVMEQPPCSVGILVDRGFGGGSHICASNVSSTVTVFFFGGRDDREALAYGRRMAEHPGITINVIRFLPSPDMAVESIAVDINVSAAMDDERVLSDFNMNKTEDESVKYEQRAVSKSSDAIEIMREFSRCNLILVGQMPEGKVVDSFHLKSLECPELGPIGSLLTSSLELSTSASVLVIQQFRGPSLSSSSTSAMVLPEELN 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11085310 11091331 + Tan0012513.2 Tan01g1129 738553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1129 799 FunFam Cation/H(+) antiporter 15 35 437 - -
Tan01g1129 799 Gene3D - 35 440 IPR038770 -
Tan01g1129 799 PANTHER CATION/H + ANTIPORTER 11 780 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Tan01g1129 799 Pfam Sodium/hydrogen exchanger family 47 426 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1129 K26731 - - csv:101203169 1282.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1129 Tan-Chr1:11085310 Tan01g1131 Tan-Chr1:11122339 3.80E-302 dispersed
Tan01g1128 Tan-Chr1:11084435 Tan01g1129 Tan-Chr1:11085310 0.00E+00 tandem
Tan01g1129 Tan-Chr1:11085310 Tan01g1130 Tan-Chr1:11099510 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan07g0862 . 11 815 Antiporter Super Family AT2G13620 72.5 0.0e+00 1167.1
Tan01g1130 . 11 771 Antiporter Super Family AT2G13620 50.7 3.3e-208 722.6
Tan03g0976 . 75 838 Antiporter Super Family AT3G53720 68.4 4.1e-285 978.0
Tan03g0979 . 78 786 Antiporter Super Family AT3G53720 58.3 4.0e-224 775.4
Tan01g1130 . 83 768 Antiporter Super Family AT3G53720 50.6 2.7e-180 629.8
Tan01g1131 . 1 797 Antiporter Super Family AT5G41610 69.6 1.9e-312 1068.9
Tan01g1132 . 1 797 Antiporter Super Family AT5G41610 69.6 1.9e-312 1068.9
Tan01g1128 . 1 792 Antiporter Super Family AT5G41610 67.2 1.0e-302 1036.6
Tan01g1129 . 1 792 Antiporter Super Family AT5G41610 67.2 1.0e-302 1036.6
Tan01g1130 . 1 771 Antiporter Super Family AT5G41610 68.7 1.0e-302 1036.6
Tan01g1130 . 9 786 Antiporter Super Family AT4G23700 67.4 4.1e-299 1024.6
Tan01g1128 . 10 797 Antiporter Super Family AT4G23700 63.5 2.1e-287 985.7
Tan01g1129 . 10 797 Antiporter Super Family AT4G23700 63.5 2.1e-287 985.7
Tan01g1131 . 9 796 Antiporter Super Family AT4G23700 62.9 2.2e-281 965.7
Tan01g1132 . 9 796 Antiporter Super Family AT4G23700 62.9 2.2e-281 965.7
Tan01g1131 . 3 779 Antiporter Super Family AT3G17630 64.0 8.0e-276 947.2
Tan01g1132 . 3 779 Antiporter Super Family AT3G17630 64.0 8.0e-276 947.2
Tan01g1130 . 4 769 Antiporter Super Family AT3G17630 64.8 1.3e-273 939.9
Tan01g1128 . 3 779 Antiporter Super Family AT3G17630 62.9 2.2e-273 939.1
Tan01g1129 . 3 779 Antiporter Super Family AT3G17630 62.9 2.2e-273 939.1
Tan03g0976 . 8 839 Antiporter Super Family AT3G17630 50.4 2.3e-206 716.5
Tan01g1128 . 4 787 Antiporter Super Family AT1G64170 57.0 1.2e-239 827.0
Tan01g1129 . 4 787 Antiporter Super Family AT1G64170 57.0 1.2e-239 827.0
Tan01g1130 . 11 781 Antiporter Super Family AT1G64170 58.6 4.7e-239 825.1
Tan01g1131 . 1 784 Antiporter Super Family AT1G64170 56.3 1.1e-235 813.9
Tan01g1132 . 1 784 Antiporter Super Family AT1G64170 56.3 1.1e-235 813.9
Tan07g0862 . 11 815 Antiporter Super Family AT2G13620 72.5 0.0e+00 1167.1
Tan01g1130 . 11 771 Antiporter Super Family AT2G13620 50.7 3.3e-208 722.6
Tan01g1128 . 4 787 Antiporter Super Family AT1G64170 57.0 1.2e-239 827.0
Tan01g1129 . 4 787 Antiporter Super Family AT1G64170 57.0 1.2e-239 827.0
Tan01g1130 . 11 781 Antiporter Super Family AT1G64170 58.6 4.7e-239 825.1
Tan01g1131 . 1 784 Antiporter Super Family AT1G64170 56.3 1.1e-235 813.9
Tan01g1132 . 1 784 Antiporter Super Family AT1G64170 56.3 1.1e-235 813.9
Tan01g1130 . 9 786 Antiporter Super Family AT4G23700 67.4 4.1e-299 1024.6
Tan01g1128 . 10 797 Antiporter Super Family AT4G23700 63.5 2.1e-287 985.7
Tan01g1129 . 10 797 Antiporter Super Family AT4G23700 63.5 2.1e-287 985.7
Tan01g1131 . 9 796 Antiporter Super Family AT4G23700 62.9 2.2e-281 965.7
Tan01g1132 . 9 796 Antiporter Super Family AT4G23700 62.9 2.2e-281 965.7
Tan01g1131 . 1 797 Antiporter Super Family AT5G41610 69.6 1.9e-312 1068.9
Tan01g1132 . 1 797 Antiporter Super Family AT5G41610 69.6 1.9e-312 1068.9
Tan01g1128 . 1 792 Antiporter Super Family AT5G41610 67.2 1.0e-302 1036.6
Tan01g1129 . 1 792 Antiporter Super Family AT5G41610 67.2 1.0e-302 1036.6
Tan01g1130 . 1 771 Antiporter Super Family AT5G41610 68.7 1.0e-302 1036.6
Tan01g1131 . 3 779 Antiporter Super Family AT3G17630 64.0 8.0e-276 947.2
Tan01g1132 . 3 779 Antiporter Super Family AT3G17630 64.0 8.0e-276 947.2
Tan01g1130 . 4 769 Antiporter Super Family AT3G17630 64.8 1.3e-273 939.9
Tan01g1128 . 3 779 Antiporter Super Family AT3G17630 62.9 2.2e-273 939.1
Tan01g1129 . 3 779 Antiporter Super Family AT3G17630 62.9 2.2e-273 939.1
Tan03g0976 . 8 839 Antiporter Super Family AT3G17630 50.4 2.3e-206 716.5
Tan03g0976 . 75 838 Antiporter Super Family AT3G53720 68.4 4.1e-285 978.0
Tan03g0979 . 78 786 Antiporter Super Family AT3G53720 58.3 4.0e-224 775.4
Tan01g1130 . 83 768 Antiporter Super Family AT3G53720 50.6 2.7e-180 629.8
Tan06g0598 . 47 790 Antiporter Super Family AT3G52080 54.3 2.1e-231 799.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111