Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1150 ATGGATGGTGACATTAAGAATAATTCACATATGGCAAGTTCAAGTTCTGTCAATTACCAAGGTTCTGATGGTGGTGGTGCTTGTGAAATTGATTGGGTTGGCCTTTTTTCTGGTTCTTCTAATTTGAATTTGGAGATAATGGAGAAGGCAAGTGGAATTAGTGAGGCTGAAATGGCCATTAATGGGGATTATTATAATTATGAGGTTGGAGATCAAAAAGAAGCTCATGTTCATGCTCATGAAGGGAAGAACAACAAAGGGAAAATGGTGATGGCAAAAAGAAGTGCAATGCCAAGAGTTGCTTTTCAGACAAGAAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCTGTCAAACATAGCACTCATCCTAGGAGCTATTACCGGTGCACCCATCATACATGCAACGTTAAGAAACAAATTCAAAGGCATTCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCCTCTGAAAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTACAGTTCTTTTCTGGCATTTAG 573 39.97 MDGDIKNNSHMASSSSVNYQGSDGGGACEIDWVGLFSGSSNLNLEIMEKASGISEAEMAINGDYYNYEVGDQKEAHVHAHEGKNNKGKMVMAKRSAMPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFFSGI 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11338624 11339994 - Tan0022777.1 Tan01g1150 738574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1150 190 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 169 IPR044810 GO:0003700(InterPro)
Tan01g1150 190 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1150 190 Gene3D WRKY domain 95 170 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1150 190 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1150 190 SUPERFAMILY WRKY DNA-binding domain 104 170 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1150 190 FunFam WRKY transcription factor 57 97 171 - -
Tan01g1150 190 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1150 Tan-Chr1:11338624 Tan10g0191 Tan-Chr10:1889244 5.40E-37 dispersed
Tan01g1150 Tan-Chr1:11338624 Tan01g1151 Tan-Chr1:11344101 1.20E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26330 PF03106 WRKY 1.00E-24 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1150 - - - 0.0