Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1185 ATGGATTTTGGTTCCTCTTCTAGATTTCCCCTTGAAAATCATCATCATTATCATCATCAGTACGGATTCAGCAACAACAACAACAACCTTGATTCAAGAACAGAAGATTTTGAGCAGCAGCAGCAGCAACAACAAGAAATGGAATCAAGTTGTCTTTTTGTAGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTCATCCCAAAACAGCACGCGGAAAAGTACTTCCCACTGGATTCTTCATCCAACGAGAAAGGTCTTCTTTTGAACTTCGAAGATCGGTGTGGAAAATCATGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGCTTCGTTAAAGAGAAACGGCTCGATGCTGGTGATATTGTCTCTTTTCAACGAGGGGTTGGTGATGTTGCTAAAGATCGGTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCTCCGTCGATACGGCTATTAATTTTCATCACCATCACCACCACCACGCCGGCGGAGGTGCCCAAATTCCTCACCATTTTCAGCTTCACCAGTGGACTCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGCCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATGTCAGCCTATTTCATAATAATAACCCCTATCGGAATAATCCCTATAATAATCATCGTCATTATCATCTTCATCGTTCTAATCATCTTCCCATTGTCGGCACCGGTGATGGAGGCGACGATTCTCATGGTGGGTCGTCGGTTTTTTACCATCTAAGATCTGCCCCGGCACCGCCTTTGGAGGCGATGCCGGTTGTGGCGAGTAGAGGTGTTGGTGATAGAATTGGGAAAGTTGGTGCTGCTGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGCGCCGTGTCTGAGGATCAGTCCGATGATGAGTGTGACATAACAACCTCGACTACGACAATGTCGCCCCAGTTCCGCGTTTATAATGGAATGCCAATGTCGATGCCGATGCCGATGCCGATGTCGATGTCGATGCAAATGTCGAACAATAACAACATACCGACAACCGACTTCTTCGATAAAGGGAAGTCGTCGATGTCATCCTTAGATTTTGGTACCTGA 1173 46.38 MDFGSSSRFPLENHHHYHHQYGFSNNNNNLDSRTEDFEQQQQQQQEMESSCLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDVAKDRFFIDWRRRPPHASVDTAINFHHHHHHHAGGGAQIPHHFQLHQWTPVATPLSLHRDHALHLPQNNSNHNNVSLFHNNNPYRNNPYNNHRHYHLHRSNHLPIVGTGDGGDDSHGGSSVFYHLRSAPAPPLEAMPVVASRGVGDRIGKVGAAAKTLRLFGVNMECAVSEDQSDDECDITTSTTTMSPQFRVYNGMPMSMPMPMPMSMSMQMSNNNNIPTTDFFDKGKSSMSSLDFGT 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11562566 11567788 - Tan0021548.1 Tan01g1185 738609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1185 390 SUPERFAMILY DNA-binding pseudobarrel domain 57 148 IPR015300 -
Tan01g1185 390 Pfam B3 DNA binding domain 60 164 IPR003340 GO:0003677(InterPro)
Tan01g1185 390 MobiDBLite consensus disorder prediction 18 42 - -
Tan01g1185 390 CDD B3_DNA 58 147 IPR003340 GO:0003677(InterPro)
Tan01g1185 390 MobiDBLite consensus disorder prediction 20 42 - -
Tan01g1185 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 316 IPR044800 GO:0003700(InterPro)
Tan01g1185 390 Gene3D - 53 183 IPR015300 -
Tan01g1185 390 ProSiteProfiles B3 DNA-binding domain profile. 60 165 IPR003340 GO:0003677(InterPro)
Tan01g1185 390 FunFam B3 domain-containing protein 53 174 - -
Tan01g1185 390 SMART B3_2 60 165 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1185 K09287 - - csv:101220139 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1185 Tan-Chr1:11562566 Tan06g1845 Tan-Chr6:44839824 7.90E-59 dispersed
Tan01g1185 Tan-Chr1:11562566 Tan01g1186 Tan-Chr1:11562566 5.80E-187 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1679 . 1 162 RAV Transcription Factor Family AT2G36080 61.3 2.5e-49 192.6
Tan06g1845 . 74 212 RAV Transcription Factor Family AT2G36080 59.9 8.7e-42 167.5
Tan07g0156 . 38 149 RAV Transcription Factor Family AT2G36080 68.7 6.2e-40 161.4
Tan01g1185 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan01g1186 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan04g0897 . 191 320 RAV Transcription Factor Family AT2G36080 58.8 7.6e-38 154.5
Tan06g1845 . 74 326 RAV Transcription Factor Family AT2G46870 51.4 2.8e-59 226.5
Tan07g0156 . 22 154 RAV Transcription Factor Family AT2G46870 80.7 3.8e-56 216.1
Tan01g1185 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan01g1186 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT2G46870 68.1 2.5e-39 160.2
Tan08g1679 . 34 145 RAV Transcription Factor Family AT2G46870 64.3 3.0e-37 153.3
Tan11g1931 . 175 289 RAV Transcription Factor Family AT2G46870 65.3 1.2e-36 151.4
Tan08g1679 . 1 182 RAV Transcription Factor Family AT3G11580 51.0 4.7e-43 172.2
Tan06g1845 . 74 190 RAV Transcription Factor Family AT3G11580 64.8 4.4e-41 165.6
Tan07g0156 . 38 147 RAV Transcription Factor Family AT3G11580 62.0 2.0e-38 156.8
Tan01g1185 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan01g1186 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan06g1845 . 72 318 RAV Transcription Factor Family AT3G61970 55.0 1.1e-55 214.5
Tan07g0156 . 32 155 RAV Transcription Factor Family AT3G61970 77.2 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT3G61970 68.4 1.8e-39 160.6
Tan08g1679 . 34 145 RAV Transcription Factor Family AT3G61970 66.1 6.9e-39 158.7
Tan07g0156 . 39 155 RAV Transcription Factor Family AT4G01500 66.9 7.5e-42 168.7
Tan01g1185 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan01g1186 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan08g1679 . 34 234 RAV Transcription Factor Family AT5G06250 54.5 3.0e-49 193.0
Tan06g1845 . 75 183 RAV Transcription Factor Family AT5G06250 68.1 5.1e-41 165.6
Tan01g1185 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan01g1186 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan07g0156 . 39 147 RAV Transcription Factor Family AT5G06250 64.7 2.8e-39 159.8
Tan11g1931 . 173 284 RAV Transcription Factor Family AT5G06250 65.8 9.9e-37 151.4
Tan04g0897 . 197 305 RAV Transcription Factor Family AT5G06250 62.4 1.7e-36 150.6
Tan09g1552 . 45 342 RAV Transcription Factor Family AT1G50680 53.2 5.5e-85 312.0
Tan09g0896 . 52 327 RAV Transcription Factor Family AT1G50680 54.2 7.7e-79 291.6
Tan09g1552 . 41 342 RAV Transcription Factor Family AT1G51120 52.5 7.5e-85 311.6
Tan09g0896 . 52 279 RAV Transcription Factor Family AT1G51120 62.2 8.1e-79 291.6
Tan04g0897 . 1 361 RAV Transcription Factor Family AT1G13260 62.1 3.1e-107 386.0
Tan11g1931 . 1 328 RAV Transcription Factor Family AT1G13260 59.4 2.8e-92 336.3
Tan07g0156 . 40 153 RAV Transcription Factor Family AT1G13260 68.7 4.0e-38 156.4
Tan06g1845 . 76 183 RAV Transcription Factor Family AT1G13260 69.7 4.4e-37 152.9
Tan04g0897 . 6 359 RAV Transcription Factor Family AT3G25730 59.4 8.7e-99 357.8
Tan11g1931 . 37 326 RAV Transcription Factor Family AT3G25730 62.3 1.2e-87 320.9
Tan08g1679 . 37 146 RAV Transcription Factor Family AT3G25730 67.3 7.2e-37 152.1
Tan04g0897 . 1 362 RAV Transcription Factor Family AT1G68840 58.9 6.1e-111 398.3
Tan11g1931 . 1 329 RAV Transcription Factor Family AT1G68840 56.5 2.3e-94 343.2
Tan08g1679 . 22 156 RAV Transcription Factor Family AT1G68840 62.5 4.8e-39 159.5
Tan06g1845 . 75 195 RAV Transcription Factor Family AT1G68840 65.0 6.3e-39 159.1
Tan07g0156 . 39 147 RAV Transcription Factor Family AT1G68840 70.3 2.4e-38 157.1
Tan01g1185 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
Tan01g1186 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
Tan04g0897 . 6 359 RAV Transcription Factor Family AT3G25730 59.4 8.7e-99 357.8
Tan11g1931 . 37 326 RAV Transcription Factor Family AT3G25730 62.3 1.2e-87 320.9
Tan08g1679 . 37 146 RAV Transcription Factor Family AT3G25730 67.3 7.2e-37 152.1
Tan09g1552 . 41 342 RAV Transcription Factor Family AT1G51120 52.5 7.5e-85 311.6
Tan09g0896 . 52 279 RAV Transcription Factor Family AT1G51120 62.2 8.1e-79 291.6
Tan08g1679 . 1 182 RAV Transcription Factor Family AT3G11580 51.0 4.7e-43 172.2
Tan06g1845 . 74 190 RAV Transcription Factor Family AT3G11580 64.8 4.4e-41 165.6
Tan07g0156 . 38 147 RAV Transcription Factor Family AT3G11580 62.0 2.0e-38 156.8
Tan01g1185 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan01g1186 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan07g0156 . 39 155 RAV Transcription Factor Family AT4G01500 66.9 7.5e-42 168.7
Tan01g1185 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan01g1186 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan08g1679 . 1 162 RAV Transcription Factor Family AT2G36080 61.3 2.5e-49 192.6
Tan06g1845 . 74 212 RAV Transcription Factor Family AT2G36080 59.9 8.7e-42 167.5
Tan07g0156 . 38 149 RAV Transcription Factor Family AT2G36080 68.7 6.2e-40 161.4
Tan01g1185 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan01g1186 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan04g0897 . 191 320 RAV Transcription Factor Family AT2G36080 58.8 7.6e-38 154.5
Tan08g1679 . 34 234 RAV Transcription Factor Family AT5G06250 54.5 3.0e-49 193.0
Tan06g1845 . 75 183 RAV Transcription Factor Family AT5G06250 68.1 5.1e-41 165.6
Tan01g1185 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan01g1186 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan07g0156 . 39 147 RAV Transcription Factor Family AT5G06250 64.7 2.8e-39 159.8
Tan11g1931 . 173 284 RAV Transcription Factor Family AT5G06250 65.8 9.9e-37 151.4
Tan04g0897 . 197 305 RAV Transcription Factor Family AT5G06250 62.4 1.7e-36 150.6
Tan06g1845 . 74 326 RAV Transcription Factor Family AT2G46870 51.4 2.8e-59 226.5
Tan07g0156 . 22 154 RAV Transcription Factor Family AT2G46870 80.7 3.8e-56 216.1
Tan01g1185 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan01g1186 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT2G46870 68.1 2.5e-39 160.2
Tan08g1679 . 34 145 RAV Transcription Factor Family AT2G46870 64.3 3.0e-37 153.3
Tan11g1931 . 175 289 RAV Transcription Factor Family AT2G46870 65.3 1.2e-36 151.4
Tan09g1552 . 45 342 RAV Transcription Factor Family AT1G50680 53.2 5.5e-85 312.0
Tan09g0896 . 52 327 RAV Transcription Factor Family AT1G50680 54.2 7.7e-79 291.6
Tan06g1845 . 72 318 RAV Transcription Factor Family AT3G61970 55.0 1.1e-55 214.5
Tan07g0156 . 32 155 RAV Transcription Factor Family AT3G61970 77.2 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT3G61970 68.4 1.8e-39 160.6
Tan08g1679 . 34 145 RAV Transcription Factor Family AT3G61970 66.1 6.9e-39 158.7
Tan04g0897 . 1 361 RAV Transcription Factor Family AT1G13260 62.1 3.1e-107 386.0
Tan11g1931 . 1 328 RAV Transcription Factor Family AT1G13260 59.4 2.8e-92 336.3
Tan07g0156 . 40 153 RAV Transcription Factor Family AT1G13260 68.7 4.0e-38 156.4
Tan06g1845 . 76 183 RAV Transcription Factor Family AT1G13260 69.7 4.4e-37 152.9
Tan04g0897 . 1 362 RAV Transcription Factor Family AT1G68840 58.9 6.1e-111 398.3
Tan11g1931 . 1 329 RAV Transcription Factor Family AT1G68840 56.5 2.3e-94 343.2
Tan08g1679 . 22 156 RAV Transcription Factor Family AT1G68840 62.5 4.8e-39 159.5
Tan06g1845 . 75 195 RAV Transcription Factor Family AT1G68840 65.0 6.3e-39 159.1
Tan07g0156 . 39 147 RAV Transcription Factor Family AT1G68840 70.3 2.4e-38 157.1
Tan01g1185 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
Tan01g1186 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26333 PF02362 B3 2.80E-28 CL0405 Tan TF