Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1185 ATGGATTTTGGTTCCTCTTCTAGATTTCCCCTTGAAAATCATCATCATTATCATCATCAGTACGGATTCAGCAACAACAACAACAACCTTGATTCAAGAACAGAAGATTTTGAGCAGCAGCAGCAGCAACAACAAGAAATGGAATCAAGTTGTCTTTTTGTAGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTCATCCCAAAACAGCACGCGGAAAAGTACTTCCCACTGGATTCTTCATCCAACGAGAAAGGTCTTCTTTTGAACTTCGAAGATCGGTGTGGAAAATCATGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGCTTCGTTAAAGAGAAACGGCTCGATGCTGGTGATATTGTCTCTTTTCAACGAGGGGTTGGTGATGTTGCTAAAGATCGGTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCTCCGTCGATACGGCTATTAATTTTCATCACCATCACCACCACCACGCCGGCGGAGGTGCCCAAATTCCTCACCATTTTCAGCTTCACCAGTGGACTCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGCCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATGTCAGCCTATTTCATAATAATAACCCCTATCGGAATAATCCCTATAATAATCATCGTCATTATCATCTTCATCGTTCTAATCATCTTCCCATTGTCGGCACCGGTGATGGAGGCGACGATTCTCATGGTGGGTCGTCGGTTTTTTACCATCTAAGATCTGCCCCGGCACCGCCTTTGGAGGCGATGCCGGTTGTGGCGAGTAGAGGTGTTGGTGATAGAATTGGGAAAGTTGGTGCTGCTGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGCGCCGTGTCTGAGGATCAGTCCGATGATGAGTGTGACATAACAACCTCGACTACGACAATGTCGCCCCAGTTCCGCGTTTATAATGGAATGCCAATGTCGATGCCGATGCCGATGCCGATGTCGATGTCGATGCAAATGTCGAACAATAACAACATACCGACAACCGACTTCTTCGATAAAGGGAAGTCGTCGATGTCATCCTTAGATTTTGGTACCTGA 1173 46.38 MDFGSSSRFPLENHHHYHHQYGFSNNNNNLDSRTEDFEQQQQQQQEMESSCLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDVAKDRFFIDWRRRPPHASVDTAINFHHHHHHHAGGGAQIPHHFQLHQWTPVATPLSLHRDHALHLPQNNSNHNNVSLFHNNNPYRNNPYNNHRHYHLHRSNHLPIVGTGDGGDDSHGGSSVFYHLRSAPAPPLEAMPVVASRGVGDRIGKVGAAAKTLRLFGVNMECAVSEDQSDDECDITTSTTTMSPQFRVYNGMPMSMPMPMPMSMSMQMSNNNNIPTTDFFDKGKSSMSSLDFGT 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11562566 11567788 - Tan0021548.1 Tan01g1185 738609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1185 390 SUPERFAMILY DNA-binding pseudobarrel domain 57 148 IPR015300 -
Tan01g1185 390 Pfam B3 DNA binding domain 60 164 IPR003340 GO:0003677(InterPro)
Tan01g1185 390 MobiDBLite consensus disorder prediction 18 42 - -
Tan01g1185 390 CDD B3_DNA 58 147 IPR003340 GO:0003677(InterPro)
Tan01g1185 390 MobiDBLite consensus disorder prediction 20 42 - -
Tan01g1185 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 316 IPR044800 GO:0003700(InterPro)
Tan01g1185 390 Gene3D - 53 183 IPR015300 -
Tan01g1185 390 ProSiteProfiles B3 DNA-binding domain profile. 60 165 IPR003340 GO:0003677(InterPro)
Tan01g1185 390 FunFam B3 domain-containing protein 53 174 - -
Tan01g1185 390 SMART B3_2 60 165 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1185 Tan-Chr1:11562566 Tan06g1845 Tan-Chr6:44839824 7.90E-59 dispersed
Tan01g1185 Tan-Chr1:11562566 Tan01g1186 Tan-Chr1:11562566 5.80E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26333 PF02362 B3 2.80E-28 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1185 K09287 - csv:101220139 397.897