Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1213 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAAGCCGCCCTTTGCCGTTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCGCCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGACCCGTCTCCACACTCCAAGGTTCCCAATGATATTGGTAAAGGACATAACCAGCCACTGTCGCATAAAGTGACTGTGGAAGACAATCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCTAATGATGATGGTCAGGCCGAGACCGATACGAAAATGATCGATCTGAATATGAAGCCTCAAAGGGTCCATGGGCAAGCTGCTAATAATCAGGATCTATGA 561 46.17 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNDIGKGHNQPLSHKVTVEDNQQNHHRLSPVREANDDGQAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11814389 11818660 + Tan0020093.1 Tan01g1213 738637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1213 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan01g1213 186 Gene3D Classic Zinc Finger 2 96 - -
Tan01g1213 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Tan01g1213 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Tan01g1213 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Tan01g1213 186 MobiDBLite consensus disorder prediction 139 163 - -
Tan01g1213 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan01g1213 186 MobiDBLite consensus disorder prediction 106 186 - -
Tan01g1213 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Tan01g1213 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Tan01g1213 186 FunFam B-box zinc finger protein 19 2 92 - -
Tan01g1213 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
Tan01g1213 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1213 Tan-Chr1:11814389 Tan03g2053 Tan-Chr3:75499335 3.10E-53 dispersed
Tan01g1213 Tan-Chr1:11814389 Tan01g1214 Tan-Chr1:11814389 4.20E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26336 PF00643 zf-B_box 2.40E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1213 - - - 0.0