Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1214 ATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCGCCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGACCCGTCTCCACACTCCAAGGTTCCCAATGATATTGGTAAAGGACATAACCAGCCACTGTCGCATAAAGTGACTGTGGAAGACAATCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCTAATGATGATGGTCAGGCCGAGACCGATACGAAAATGATCGATCTGAATATGAAGCCTCAAAGGGTCCATGGGCAAGCTGCTAATAATCAGGATCTATGA 462 44.81 MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNDIGKGHNQPLSHKVTVEDNQQNHHRLSPVREANDDGQAETDTKMIDLNMKPQRVHGQAANNQDL 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11814389 11818660 + Tan0020093.2 Tan01g1214 738638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1214 153 Pfam B-box zinc finger 19 59 IPR000315 GO:0008270(InterPro)
Tan01g1214 153 SMART bboxneu5 18 63 IPR000315 GO:0008270(InterPro)
Tan01g1214 153 CDD Bbox1_BBX-like 23 63 IPR049808 -
Tan01g1214 153 ProSiteProfiles Zinc finger B-box type profile. 18 63 IPR000315 GO:0008270(InterPro)
Tan01g1214 153 MobiDBLite consensus disorder prediction 72 153 - -
Tan01g1214 153 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 139 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan01g1214 153 SUPERFAMILY B-box zinc-binding domain 15 55 - -
Tan01g1214 153 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1214 Tan-Chr1:11814389 Tan03g2053 Tan-Chr3:75499335 2.30E-38 dispersed
Tan01g1213 Tan-Chr1:11814389 Tan01g1214 Tan-Chr1:11814389 4.20E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26337 PF00643 zf-B_box 1.70E-06 No_clan Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1214 - - - 0.0