Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1214 | ATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCGCCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGACCCGTCTCCACACTCCAAGGTTCCCAATGATATTGGTAAAGGACATAACCAGCCACTGTCGCATAAAGTGACTGTGGAAGACAATCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCTAATGATGATGGTCAGGCCGAGACCGATACGAAAATGATCGATCTGAATATGAAGCCTCAAAGGGTCCATGGGCAAGCTGCTAATAATCAGGATCTATGA | 462 | 44.81 | MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNDIGKGHNQPLSHKVTVEDNQQNHHRLSPVREANDDGQAETDTKMIDLNMKPQRVHGQAANNQDL | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11814389 | 11818660 | + | Tan0020093.2 | Tan01g1214 | 738638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1214 | 153 | Pfam | B-box zinc finger | 19 | 59 | IPR000315 | GO:0008270(InterPro) | |
Tan01g1214 | 153 | SMART | bboxneu5 | 18 | 63 | IPR000315 | GO:0008270(InterPro) | |
Tan01g1214 | 153 | CDD | Bbox1_BBX-like | 23 | 63 | IPR049808 | - | |
Tan01g1214 | 153 | ProSiteProfiles | Zinc finger B-box type profile. | 18 | 63 | IPR000315 | GO:0008270(InterPro) | |
Tan01g1214 | 153 | MobiDBLite | consensus disorder prediction | 72 | 153 | - | - | |
Tan01g1214 | 153 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 139 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Tan01g1214 | 153 | SUPERFAMILY | B-box zinc-binding domain | 15 | 55 | - | - | |
Tan01g1214 | 153 | MobiDBLite | consensus disorder prediction | 106 | 130 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1214 | Tan-Chr1:11814389 | Tan03g2053 | Tan-Chr3:75499335 | 2.30E-38 | dispersed | |
Tan01g1213 | Tan-Chr1:11814389 | Tan01g1214 | Tan-Chr1:11814389 | 4.20E-87 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26337 | PF00643 | zf-B_box | 1.70E-06 | No_clan | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1214 | - | - | - | 0.0 |