Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1235 | ATGTCACTTAGAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCAAAGCGAGGAGAAGAAGGGAGCAGGCATTGGCGAAACCGCACAATGTCGCATATTGCACCCGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCTCCCGAATTACTCTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGTCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGCATGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGCTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTCGGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGCACAATTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAAGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTATCGATGACCACCTTTCTTCCATGTCTGATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCTCGAAGACCCTATCAGAACCAGCAGTTCAGGGTTCAAATGATTCCTTGGTGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTTCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCTGTCGATCAATCTCACAACGTTTCAGTGGAAGAGCAAGAGAAGGTCATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAGGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA | 1242 | 46.54 | MSLRSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRSITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGMVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSMSDSMRKDSAKDFGSKTLSEPAVQGSNDSLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11934285 | 11936076 | + | Tan0000409.1 | Tan01g1235 | 738659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1235 | 413 | Gene3D | - | 50 | 103 | - | - | |
Tan01g1235 | 413 | Gene3D | Tubby Protein; Chain A | 114 | 413 | IPR025659 | - | |
Tan01g1235 | 413 | CDD | F-box_AtTLP-like | 56 | 100 | - | - | |
Tan01g1235 | 413 | Pfam | F-box-like | 56 | 99 | IPR001810 | GO:0005515(InterPro) | |
Tan01g1235 | 413 | SUPERFAMILY | F-box domain | 50 | 100 | IPR036047 | GO:0005515(InterPro) | |
Tan01g1235 | 413 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - | |
Tan01g1235 | 413 | Pfam | Tub family | 117 | 408 | IPR000007 | - | |
Tan01g1235 | 413 | FunFam | Tubby-like F-box protein | 113 | 413 | - | - | |
Tan01g1235 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Tan01g1235 | 413 | PANTHER | TUBBY-RELATED | 43 | 412 | - | - | |
Tan01g1235 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Tan01g1235 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 413 | IPR025659 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 187 | 211 | IPR000007 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 171 | 187 | IPR000007 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Tan01g1235 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1235 | Tan-Chr1:11934285 | Tan03g1988 | Tan-Chr3:74918437 | 3.40E-177 | dispersed | |
Tan01g0725 | Tan-Chr1:6860784 | Tan01g1235 | Tan-Chr1:11934285 | 8.20E-126 | transposed | |
Tan01g1235 | Tan-Chr1:11934285 | Tan01g4949 | Tan-Chr1:115269461 | 2.10E-150 | wgd | |
Tan01g1235 | Tan-Chr1:11934285 | Tan03g1987 | Tan-Chr3:74918437 | 3.40E-177 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26338 | PF01167 | Tub | 1.40E-106 | CL0395 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1235 | K19600 | - | csv:101205595 | 785.023 |