Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1235 ATGTCACTTAGAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCAAAGCGAGGAGAAGAAGGGAGCAGGCATTGGCGAAACCGCACAATGTCGCATATTGCACCCGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCTCCCGAATTACTCTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGTCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGCATGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGCTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTCGGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGCACAATTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAAGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTATCGATGACCACCTTTCTTCCATGTCTGATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCTCGAAGACCCTATCAGAACCAGCAGTTCAGGGTTCAAATGATTCCTTGGTGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTTCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCTGTCGATCAATCTCACAACGTTTCAGTGGAAGAGCAAGAGAAGGTCATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAGGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 46.54 MSLRSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRSITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGMVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSMSDSMRKDSAKDFGSKTLSEPAVQGSNDSLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11934285 11936076 + Tan0000409.1 Tan01g1235 738659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1235 413 Gene3D - 50 103 - -
Tan01g1235 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Tan01g1235 413 CDD F-box_AtTLP-like 56 100 - -
Tan01g1235 413 Pfam F-box-like 56 99 IPR001810 GO:0005515(InterPro)
Tan01g1235 413 SUPERFAMILY F-box domain 50 100 IPR036047 GO:0005515(InterPro)
Tan01g1235 413 MobiDBLite consensus disorder prediction 207 227 - -
Tan01g1235 413 Pfam Tub family 117 408 IPR000007 -
Tan01g1235 413 FunFam Tubby-like F-box protein 113 413 - -
Tan01g1235 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Tan01g1235 413 PANTHER TUBBY-RELATED 43 412 - -
Tan01g1235 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Tan01g1235 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Tan01g1235 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1235 K19600 - - csv:101205595 785.023
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1235 Tan-Chr1:11934285 Tan03g1988 Tan-Chr3:74918437 3.40E-177 dispersed
Tan01g0725 Tan-Chr1:6860784 Tan01g1235 Tan-Chr1:11934285 8.20E-126 transposed
Tan01g1235 Tan-Chr1:11934285 Tan01g4949 Tan-Chr1:115269461 2.10E-150 wgd
Tan01g1235 Tan-Chr1:11934285 Tan03g1987 Tan-Chr3:74918437 3.40E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g3331 . 1 430 TUB Transcription Factor Family AT1G76900 72.3 9.8e-178 620.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan11g1138 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G76900 70.1 4.4e-170 595.1
Tan01g1235 . 1 413 TUB Transcription Factor Family AT1G76900 51.1 4.8e-116 415.6
Tan06g2627 . 13 386 TUB Transcription Factor Family AT1G76900 50.8 9.0e-115 411.4
Tan10g0947 . 13 390 TUB Transcription Factor Family AT1G76900 51.4 2.2e-113 406.8
Tan01g0725 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.4e-101 365.2
Tan11g1139 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan11g1138 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan01g3331 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 6.8e-94 341.3
Tan01g1235 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 1.4e-70 263.8
Tan10g0947 . 154 390 TUB Transcription Factor Family AT1G25280 52.4 1.2e-69 260.8
Tan06g2627 . 154 386 TUB Transcription Factor Family AT1G25280 53.9 9.8e-69 257.7
Tan01g4949 . 181 410 TUB Transcription Factor Family AT1G25280 53.4 5.4e-67 251.9
Tan03g1988 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan03g1987 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT5G18680 63.1 1.1e-100 364.0
Tan10g0947 . 98 390 TUB Transcription Factor Family AT5G18680 62.3 1.4e-95 347.1
Tan01g3331 . 112 430 TUB Transcription Factor Family AT5G18680 53.6 1.1e-84 310.8
Tan01g0725 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 3.5e-83 305.8
Tan11g1139 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan11g1138 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan01g1235 . 115 413 TUB Transcription Factor Family AT5G18680 53.0 5.2e-79 292.0
Tan01g4949 . 117 410 TUB Transcription Factor Family AT5G18680 51.2 1.6e-75 280.4
Tan03g1988 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan03g1987 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan01g0880 . 119 387 TUB Transcription Factor Family AT5G18680 50.7 1.9e-68 256.9
Tan01g1235 . 1 413 TUB Transcription Factor Family AT2G18280 61.6 4.0e-143 505.4
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan01g4949 . 3 410 TUB Transcription Factor Family AT2G18280 59.0 3.2e-124 442.6
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 2.6e-118 422.9
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 4.2e-116 415.6
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G18280 53.6 9.3e-116 414.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G18280 52.9 2.5e-113 406.4
Tan01g0880 . 54 387 TUB Transcription Factor Family AT2G18280 51.3 5.3e-95 345.5
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G47900 56.6 6.0e-134 474.9
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 3.6e-131 465.7
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan01g1235 . 5 413 TUB Transcription Factor Family AT2G47900 55.2 6.8e-122 434.9
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan01g4949 . 15 410 TUB Transcription Factor Family AT2G47900 55.4 4.3e-116 415.6
Tan01g0880 . 55 387 TUB Transcription Factor Family AT2G47900 52.9 1.2e-102 370.9
Tan06g0484 . 79 304 TUB Transcription Factor Family AT1G16070 60.0 2.7e-72 269.6
Tan01g3331 . 67 430 TUB Transcription Factor Family AT1G43640 70.2 1.1e-147 520.4
Tan01g0725 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.8e-145 513.1
Tan11g1139 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan11g1138 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan06g2627 . 47 386 TUB Transcription Factor Family AT1G43640 52.3 1.9e-107 386.7
Tan10g0947 . 49 390 TUB Transcription Factor Family AT1G43640 53.3 2.7e-106 382.9
Tan01g4949 . 36 410 TUB Transcription Factor Family AT1G47270 63.3 3.3e-134 475.7
Tan01g1235 . 34 413 TUB Transcription Factor Family AT1G47270 58.3 7.7e-123 438.0
Tan03g1988 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan03g1987 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 2.0e-115 413.3
Tan01g3331 . 31 430 TUB Transcription Factor Family AT1G47270 52.1 9.4e-113 404.4
Tan11g1139 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan11g1138 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan06g2627 . 1 386 TUB Transcription Factor Family AT1G47270 51.1 1.5e-110 397.1
Tan10g0947 . 1 390 TUB Transcription Factor Family AT1G47270 50.1 9.5e-105 377.9
Tan01g0880 . 1 387 TUB Transcription Factor Family AT1G53320 71.8 3.9e-156 548.5
Tan01g1235 . 20 413 TUB Transcription Factor Family AT1G53320 51.3 1.0e-103 374.4
Tan06g2627 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 1.5e-102 370.5
Tan10g0947 . 33 390 TUB Transcription Factor Family AT1G53320 51.9 3.4e-99 359.4
Tan10g0947 . 98 390 TUB Transcription Factor Family AT3G06380 64.8 1.4e-97 353.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT3G06380 63.1 2.0e-96 349.7
Tan01g0725 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 5.8e-83 305.1
Tan01g3331 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 3.7e-82 302.4
Tan11g1139 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan11g1138 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan01g1235 . 119 413 TUB Transcription Factor Family AT3G06380 53.8 5.1e-79 292.0
Tan01g4949 . 121 410 TUB Transcription Factor Family AT3G06380 50.7 7.3e-78 288.1
Tan03g1988 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
Tan03g1987 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26338 PF01167 Tub 1.40E-106 CL0395 Tan TF