Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1235 ATGTCACTTAGAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCAAAGCGAGGAGAAGAAGGGAGCAGGCATTGGCGAAACCGCACAATGTCGCATATTGCACCCGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCTCCCGAATTACTCTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGTCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGCATGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGCTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTCGGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGCACAATTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAAGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTATCGATGACCACCTTTCTTCCATGTCTGATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCTCGAAGACCCTATCAGAACCAGCAGTTCAGGGTTCAAATGATTCCTTGGTGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTTCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCTGTCGATCAATCTCACAACGTTTCAGTGGAAGAGCAAGAGAAGGTCATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAGGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 46.54 MSLRSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRSITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGMVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSMSDSMRKDSAKDFGSKTLSEPAVQGSNDSLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11934285 11936076 + Tan0000409.1 Tan01g1235 738659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1235 413 Gene3D - 50 103 - -
Tan01g1235 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Tan01g1235 413 CDD F-box_AtTLP-like 56 100 - -
Tan01g1235 413 Pfam F-box-like 56 99 IPR001810 GO:0005515(InterPro)
Tan01g1235 413 SUPERFAMILY F-box domain 50 100 IPR036047 GO:0005515(InterPro)
Tan01g1235 413 MobiDBLite consensus disorder prediction 207 227 - -
Tan01g1235 413 Pfam Tub family 117 408 IPR000007 -
Tan01g1235 413 FunFam Tubby-like F-box protein 113 413 - -
Tan01g1235 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Tan01g1235 413 PANTHER TUBBY-RELATED 43 412 - -
Tan01g1235 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Tan01g1235 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Tan01g1235 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Tan01g1235 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1235 Tan-Chr1:11934285 Tan03g1988 Tan-Chr3:74918437 3.40E-177 dispersed
Tan01g0725 Tan-Chr1:6860784 Tan01g1235 Tan-Chr1:11934285 8.20E-126 transposed
Tan01g1235 Tan-Chr1:11934285 Tan01g4949 Tan-Chr1:115269461 2.10E-150 wgd
Tan01g1235 Tan-Chr1:11934285 Tan03g1987 Tan-Chr3:74918437 3.40E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26338 PF01167 Tub 1.40E-106 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1235 K19600 - csv:101205595 785.023