Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1242 ATGGAAGTAAGAGACCAACAACAAATCACAGATCATCAAAGCTTCGGCCATGGAAGCTCAAGCTCGCCCCAAACCCTAGACCAGATTCACCTTTCTTTTCAATATTCCCTCAGACCCAGAAGAGATCATCCTCCTCCGAACCCAGATCCGACGCCACCGCCAGACGCCGCCGCTGCGCCGTCGTCTCCGGTAAGGTATCGTGAATGTTTGAAGAACCACGCCGCCAAGAGCGGCGGCCACGTGCTCGACGGCTGCGGAGAGTTCATGCCCAGTGGGGAAGATGGTACTTCCGATAGCTTTAAGTGCGCCGCCTGCGAATGCCACCGGAGTTTCCACCGGAGAGAATTAGAAGTGGATGCGGCAAACGGCCGGCTTAAACGGATAAGCTATGCACCACAGCCATATTCCCAAGTGAACCGGAGCAATAACCACGACTACCCTCCGGTGGGTCATATGGCTCCGGTGATGATGGCATTCGGCGGTTCAGCGGAGTCGTCGAGCGACGGCGCAGAAGCCTCAGGGCAGCGGAAGAAGCGGTTCAGGACAAAGTTCAGTGGAGAACAGAAGGGTAAAATGATGGAGTTCGCCAACAAGCTCGGATGGAAGATTCAAAAGCATGATGAACAACTCCTCCATAAATTTTGCACCGAAATTGGCGTAAAGAGACACATTTTTAAGGTTTGGATGCACAACAACAAACAACCAGCCAAGAACAATTCTTCATCAGGATAA 732 52.46 MEVRDQQQITDHQSFGHGSSSSPQTLDQIHLSFQYSLRPRRDHPPPNPDPTPPPDAAAAPSSPVRYRECLKNHAAKSGGHVLDGCGEFMPSGEDGTSDSFKCAACECHRSFHRRELEVDAANGRLKRISYAPQPYSQVNRSNNHDYPPVGHMAPVMMAFGGSAESSSDGAEASGQRKKRFRTKFSGEQKGKMMEFANKLGWKIQKHDEQLLHKFCTEIGVKRHIFKVWMHNNKQPAKNNSSSG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11986197 11989337 - Tan0010811.1 Tan01g1242 738666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1242 243 MobiDBLite consensus disorder prediction 160 185 - -
Tan01g1242 243 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 115 IPR006456 -
Tan01g1242 243 MobiDBLite consensus disorder prediction 1 63 - -
Tan01g1242 243 MobiDBLite consensus disorder prediction 8 32 - -
Tan01g1242 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 234 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan01g1242 243 MobiDBLite consensus disorder prediction 171 185 - -
Tan01g1242 243 SUPERFAMILY Homeodomain-like 163 237 IPR009057 -
Tan01g1242 243 Gene3D - 161 240 - -
Tan01g1242 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Tan01g1242 243 FunFam Zinc-finger homeodomain protein 2 164 238 - -
Tan01g1242 243 NCBIfam homeobox domain, ZF-HD class 177 234 IPR006455 -
Tan01g1242 243 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1242 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1242 Tan-Chr1:11986197 Tan03g1984 Tan-Chr3:74903103 1.00E-48 dispersed
Tan01g1242 Tan-Chr1:11986197 Tan02g2444 Tan-Chr2:93022400 2.50E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014602 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26339 PF04770 ZF-HD_dimer 2.00E-29 No_clan Tan TF