Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1242 ATGGAAGTAAGAGACCAACAACAAATCACAGATCATCAAAGCTTCGGCCATGGAAGCTCAAGCTCGCCCCAAACCCTAGACCAGATTCACCTTTCTTTTCAATATTCCCTCAGACCCAGAAGAGATCATCCTCCTCCGAACCCAGATCCGACGCCACCGCCAGACGCCGCCGCTGCGCCGTCGTCTCCGGTAAGGTATCGTGAATGTTTGAAGAACCACGCCGCCAAGAGCGGCGGCCACGTGCTCGACGGCTGCGGAGAGTTCATGCCCAGTGGGGAAGATGGTACTTCCGATAGCTTTAAGTGCGCCGCCTGCGAATGCCACCGGAGTTTCCACCGGAGAGAATTAGAAGTGGATGCGGCAAACGGCCGGCTTAAACGGATAAGCTATGCACCACAGCCATATTCCCAAGTGAACCGGAGCAATAACCACGACTACCCTCCGGTGGGTCATATGGCTCCGGTGATGATGGCATTCGGCGGTTCAGCGGAGTCGTCGAGCGACGGCGCAGAAGCCTCAGGGCAGCGGAAGAAGCGGTTCAGGACAAAGTTCAGTGGAGAACAGAAGGGTAAAATGATGGAGTTCGCCAACAAGCTCGGATGGAAGATTCAAAAGCATGATGAACAACTCCTCCATAAATTTTGCACCGAAATTGGCGTAAAGAGACACATTTTTAAGGTTTGGATGCACAACAACAAACAACCAGCCAAGAACAATTCTTCATCAGGATAA 732 52.46 MEVRDQQQITDHQSFGHGSSSSPQTLDQIHLSFQYSLRPRRDHPPPNPDPTPPPDAAAAPSSPVRYRECLKNHAAKSGGHVLDGCGEFMPSGEDGTSDSFKCAACECHRSFHRRELEVDAANGRLKRISYAPQPYSQVNRSNNHDYPPVGHMAPVMMAFGGSAESSSDGAEASGQRKKRFRTKFSGEQKGKMMEFANKLGWKIQKHDEQLLHKFCTEIGVKRHIFKVWMHNNKQPAKNNSSSG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11986197 11989337 - Tan0010811.1 Tan01g1242 738666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1242 243 MobiDBLite consensus disorder prediction 160 185 - -
Tan01g1242 243 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 115 IPR006456 -
Tan01g1242 243 MobiDBLite consensus disorder prediction 1 63 - -
Tan01g1242 243 MobiDBLite consensus disorder prediction 8 32 - -
Tan01g1242 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 234 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan01g1242 243 MobiDBLite consensus disorder prediction 171 185 - -
Tan01g1242 243 SUPERFAMILY Homeodomain-like 163 237 IPR009057 -
Tan01g1242 243 Gene3D - 161 240 - -
Tan01g1242 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Tan01g1242 243 FunFam Zinc-finger homeodomain protein 2 164 238 - -
Tan01g1242 243 NCBIfam homeobox domain, ZF-HD class 177 234 IPR006455 -
Tan01g1242 243 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1242 Tan-Chr1:11986197 Tan03g1984 Tan-Chr3:74903103 1.00E-48 dispersed
Tan01g1242 Tan-Chr1:11986197 Tan02g2444 Tan-Chr2:93022400 2.50E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26339 PF04770 ZF-HD_dimer 2.00E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1242 - - - 0.0