Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1255 ATGGCTACATTCGTCGAGCCACCGAACGGAATGAGGACAATGGGGAAACATTATTACACAATGTGGCAAACTCTGTTTGAAATTGATACTAAGTATGTTCCAATCAAGCCGATTGGACGAGGAGCGTACGGTGTGGTGTGTTCTTCGATCAACCGAGAGACCAACGAGAAAGTGGCGATCAAGAAGATTAACAATGTGTTTGAGAATCGCATCGACGCCATGAGAACGCTGAGGGAGTTGATGCTTTTGAGACAGATAAGGCATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCGATCCATAGAAAAAGCTTTAAGGATGTGTATTTGGTTTATGAGCTCATGGATACTGATCTTCATCAGATTATCAAATCTTCTCAGCCCCTTTCTAATGATCATTGCAAGTATTTTATCTTTCAGTTGCTTTGCGGCTTGCAGTATCTTCATTCAGCAAACATTCTTCACCGGGACTTGAAGCCCGGTAACCTCCTCGTCAATGCTAACTGCGATCTGAAGATTTGTGACTTCGGGTTGGCACGAACGGCCATTGGCCATGACGAGTTCATGACTGAGTATGTTGTTACTCGCTGGTATCGCGCACCAGAGCTTCTCCTCTGCTGTGACAACTATGGGACTTCCATTGATGTATGGTCTGTGGGATGCATCTTTGCTGAGATTCTGGGTCGGCTACCTCTTTTCCCAGGGACGGAGTGCCTCAATCAACTCAGCTTAATCATCGACATTCTCGGTAGTCCAAAGGAGGCAGATATTGAGTTCATTGACAATGCAAAGTCCAGAAAGTTTATCCAGACGATGGCCTTTTCAAGAGGAATCCACCTCTCACGTCTATATCCAGATGCTGAACCTTTAGCATTAGATTTGCTGCAGAAGATGCTTGTGTTTGATCCAAGGAAGAGAATTACCGTCGACGAAGCACTTCAACATCCATACATGTCAGGGCTATACGACCCGAAATTCAATCCTCCTGCTGAGGTTCCCCTCACTCTTGACATCAACGAATCACTTGGGGAGCATAAGATCAGGGAAATGATGTTGAATGAGATGCTCTATTACCATCCTGAAGCTGCTCCTCCAGCCTATTCTTGA 1110 45.23 MATFVEPPNGMRTMGKHYYTMWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKINNVFENRIDAMRTLRELMLLRQIRHENVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIFQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTAIGHDEFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRLPLFPGTECLNQLSLIIDILGSPKEADIEFIDNAKSRKFIQTMAFSRGIHLSRLYPDAEPLALDLLQKMLVFDPRKRITVDEALQHPYMSGLYDPKFNPPAEVPLTLDINESLGEHKIREMMLNEMLYYHPEAAPPAYS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12163295 12165586 + Tan0018284.1 Tan01g1255 738679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1255 369 FunFam Mitogen-activated protein kinase 18 126 - -
Tan01g1255 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g1255 369 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1255 369 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Tan01g1255 369 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1255 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan01g1255 369 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Tan01g1255 369 FunFam Mitogen-activated protein kinase 116 345 - -
Tan01g1255 369 Gene3D Phosphorylase Kinase; domain 1 19 352 - -
Tan01g1255 369 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1255 369 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1255 369 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1255 Tan-Chr1:12163295 Tan02g2001 Tan-Chr2:89172052 1.50E-163 dispersed
Tan01g1255 Tan-Chr1:12163295 Tan07g1607 Tan-Chr7:67447195 5.60E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67015 PF00069 Pkinase 5.00E-70 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1255 K20537 - csv:101203896 672.159