Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1268 ATGGCCGGTTTTTTTCCACTAGGCGGCGGAAGAGGACCCAATTATCACCTTCCCAGCAGCACCAGCACCGGCGGCGGCGAGATTATTCATCCCACCGACGGATTATTTTGGTATAAAAATTATGAGAGCTTTGAATTATGGCAGCAACAGCAGCAGCAGCAGCAGCAAGGGGGAGAAGGGTTTGGTTACTCCGGCGATGAATCGCCGCCGAGATCGTCGTTATTGATGACGAGATCCGGCAGAGGCGGCGGAGGGCAAGTAATGAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAAGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGCCGTGGCTTTGACTGTGAAACCCACGTCAAAAGCACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGGCAGCTCCATAGCGACGGCTCTAACCCCAAACGCCCTCGAGACAACCACGCCGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTCCGGTGCGTACGAATAACAACGTTGGACGAAACCAACGACGAATATGCTTATCAAACAGCTGTCAACATCGGAGGCCATATCTTCAAGGGAATTCTTCACGACCACGGCCCTGAACGACTACCACCACACAACTCCACCTCCCCCGACGGCGGCGCCCTCCTCATCACCGCCCCCTCCACCGCCGCAATTCCCACCGCGGTCGAATCCCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAACTCCTCTCAGCACCTACATCGCCGCCGGTACGCAATTTTTTCTTCCTCCAACTTCTTAG 825 55.27 MAGFFPLGGGRGPNYHLPSSTSTGGGEIIHPTDGLFWYKNYESFELWQQQQQQQQQGGEGFGYSGDESPPRSSLLMTRSGRGGGGQVMSCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERQLHSDGSNPKRPRDNHAASSGLEMGNFPVEVSSTAVFRCVRITTLDETNDEYAYQTAVNIGGHIFKGILHDHGPERLPPHNSTSPDGGALLITAPSTAAIPTAVESPPISAALLDPPPPYPTPLSTYIAAGTQFFLPPTS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12325409 12327215 - Tan0001260.1 Tan01g1268 738692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1268 274 NCBIfam putative zinc finger domain, LRP1 type 89 131 IPR006510 -
Tan01g1268 274 NCBIfam LRP1 C-terminal domain 161 208 IPR006511 -
Tan01g1268 274 MobiDBLite consensus disorder prediction 128 159 - -
Tan01g1268 274 Pfam Domain of unknown function (DUF702) 88 209 - -
Tan01g1268 274 MobiDBLite consensus disorder prediction 48 81 - -
Tan01g1268 274 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 268 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Tan01g1268 274 MobiDBLite consensus disorder prediction 128 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1268 Tan-Chr1:12325409 Tan02g2029 Tan-Chr2:89611945 5.00E-44 dispersed
Tan01g1268 Tan-Chr1:12325409 Tan01g4976 Tan-Chr1:115557683 2.90E-44 wgd
Tan01g1268 Tan-Chr1:12325409 Tan03g2042 Tan-Chr3:75397357 7.70E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26342 PF05142 DUF702 8.60E-53 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1268 K27807 - csv:101216097 362.073