Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1282 ATGCTTTACCGAACTCACCACCCATTTTTGTTCCCAAACAACCCCTCCCTTTTACTTTCCTTCTCTCTCTCTCTTCCTTTCTTTTTCATCCTCTTCTCTGCAACCACTCCTAAAACCAACGTCACAACTCTCAACCTCTTATCTTTTCCCCCCTCCCCCGTATTCAGGTACAGGTCGTCGTTACCGGACATGGAATGTGTTGATTCGGCTCTCAAAACGTGTTTCCGCAAGGAGATTTCCCTCAGCCCCCAACCCCATATCTGTTTTCATGATAATAATATCTCTTTTAATCCCCAGAATGTTCTCTCCTCCGATGATTTTTTCGTTGATCAACTCCTTGATTTGTCCCACCATGATGAATTTGTTCAACAAGATCAAGTTGCCCATGACGAAGATGATGATAAGACCTCCGTTTCCCTTTCCTTTTCTGTTTCTGCTCAAGAACTTCATCACAACTCCATTGTTTCCGACCTTCCTTCTTTGTCCTCCAGCGAACTTAGCGTTCCGGCCGATGAATTGGCAAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCTTTCTCTGGATTTTCCGCTCCCTTCCCCTCCGCTGGAATTTCTTCTTCCCTAGAGGCCGCCGTCGTTGAGGAGCAACCGGAGAACGACGGCTCCGTTTCGCCGCCGGAGCCCTGTTTCAAGTCCCCTGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTTGCTTCCCCGTCGTTGACCGAATCATCCTCCAGTTCTACGACGTCCTCCTCCTCCTCGTCGCCGACCAGTCCTTGGCTTATCATTTCCGACCCGGAAATTTTGGTCTCGAAGAAACAGAAGAGAAAGTCGCCGTCGGAAAAGGCAAGGACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGTCATTGCGGAGTCCAGAAAACCCCCCAGTGGAGAACCGGTCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTAGACTTTTACCCGAATACCGACCCGCCTGCAGTCCGACGTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTTCTCGAGATGCGCCGGAAAAAGGAAACGACCACCCCGACCGAGTTTTTGACCTCAGAAAAAAAATAG 1161 51.51 MLYRTHHPFLFPNNPSLLLSFSLSLPFFFILFSATTPKTNVTTLNLLSFPPSPVFRYRSSLPDMECVDSALKTCFRKEISLSPQPHICFHDNNISFNPQNVLSSDDFFVDQLLDLSHHDEFVQQDQVAHDEDDDKTSVSLSFSVSAQELHHNSIVSDLPSLSSSELSVPADELANLEWLSHFVEDSFSGFSAPFPSAGISSSLEAAVVEEQPENDGSVSPPEPCFKSPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPTSPWLIISDPEILVSKKQKRKSPSEKARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTTPTEFLTSEKK 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12543747 12545097 + Tan0012915.1 Tan01g1282 738706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1282 386 ProSitePatterns GATA-type zinc finger domain. 307 332 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 PANTHER GATA TRANSCRIPTION FACTOR 106 373 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan01g1282 386 Gene3D - 299 377 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan01g1282 386 CDD ZnF_GATA 306 354 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 MobiDBLite consensus disorder prediction 284 309 - -
Tan01g1282 386 MobiDBLite consensus disorder prediction 252 272 - -
Tan01g1282 386 SMART GATA_3 301 355 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 300 363 - -
Tan01g1282 386 ProSiteProfiles GATA-type zinc finger domain profile. 301 337 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 Pfam GATA zinc finger 307 341 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 FunFam GATA transcription factor 297 382 - -
Tan01g1282 386 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1282 Tan-Chr1:12543747 Tan05g1236 Tan-Chr5:12837964 1.60E-43 dispersed
Tan01g1282 Tan-Chr1:12543747 Tan03g2048 Tan-Chr3:75440332 6.00E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26344 PF00320 GATA 5.20E-16 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1282 - - - 0.0