Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g1282 | ATGCTTTACCGAACTCACCACCCATTTTTGTTCCCAAACAACCCCTCCCTTTTACTTTCCTTCTCTCTCTCTCTTCCTTTCTTTTTCATCCTCTTCTCTGCAACCACTCCTAAAACCAACGTCACAACTCTCAACCTCTTATCTTTTCCCCCCTCCCCCGTATTCAGGTACAGGTCGTCGTTACCGGACATGGAATGTGTTGATTCGGCTCTCAAAACGTGTTTCCGCAAGGAGATTTCCCTCAGCCCCCAACCCCATATCTGTTTTCATGATAATAATATCTCTTTTAATCCCCAGAATGTTCTCTCCTCCGATGATTTTTTCGTTGATCAACTCCTTGATTTGTCCCACCATGATGAATTTGTTCAACAAGATCAAGTTGCCCATGACGAAGATGATGATAAGACCTCCGTTTCCCTTTCCTTTTCTGTTTCTGCTCAAGAACTTCATCACAACTCCATTGTTTCCGACCTTCCTTCTTTGTCCTCCAGCGAACTTAGCGTTCCGGCCGATGAATTGGCAAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCTTTCTCTGGATTTTCCGCTCCCTTCCCCTCCGCTGGAATTTCTTCTTCCCTAGAGGCCGCCGTCGTTGAGGAGCAACCGGAGAACGACGGCTCCGTTTCGCCGCCGGAGCCCTGTTTCAAGTCCCCTGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTTGCTTCCCCGTCGTTGACCGAATCATCCTCCAGTTCTACGACGTCCTCCTCCTCCTCGTCGCCGACCAGTCCTTGGCTTATCATTTCCGACCCGGAAATTTTGGTCTCGAAGAAACAGAAGAGAAAGTCGCCGTCGGAAAAGGCAAGGACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGTCATTGCGGAGTCCAGAAAACCCCCCAGTGGAGAACCGGTCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTAGACTTTTACCCGAATACCGACCCGCCTGCAGTCCGACGTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTTCTCGAGATGCGCCGGAAAAAGGAAACGACCACCCCGACCGAGTTTTTGACCTCAGAAAAAAAATAG | 1161 | 51.51 | MLYRTHHPFLFPNNPSLLLSFSLSLPFFFILFSATTPKTNVTTLNLLSFPPSPVFRYRSSLPDMECVDSALKTCFRKEISLSPQPHICFHDNNISFNPQNVLSSDDFFVDQLLDLSHHDEFVQQDQVAHDEDDDKTSVSLSFSVSAQELHHNSIVSDLPSLSSSELSVPADELANLEWLSHFVEDSFSGFSAPFPSAGISSSLEAAVVEEQPENDGSVSPPEPCFKSPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPTSPWLIISDPEILVSKKQKRKSPSEKARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTTPTEFLTSEKK | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12543747 | 12545097 | + | Tan0012915.1 | Tan01g1282 | 738706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g1282 | 386 | ProSitePatterns | GATA-type zinc finger domain. | 307 | 332 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g1282 | 386 | PANTHER | GATA TRANSCRIPTION FACTOR | 106 | 373 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Tan01g1282 | 386 | Gene3D | - | 299 | 377 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Tan01g1282 | 386 | CDD | ZnF_GATA | 306 | 354 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g1282 | 386 | MobiDBLite | consensus disorder prediction | 284 | 309 | - | - | |
Tan01g1282 | 386 | MobiDBLite | consensus disorder prediction | 252 | 272 | - | - | |
Tan01g1282 | 386 | SMART | GATA_3 | 301 | 355 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g1282 | 386 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 300 | 363 | - | - | |
Tan01g1282 | 386 | ProSiteProfiles | GATA-type zinc finger domain profile. | 301 | 337 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g1282 | 386 | Pfam | GATA zinc finger | 307 | 341 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g1282 | 386 | FunFam | GATA transcription factor | 297 | 382 | - | - | |
Tan01g1282 | 386 | MobiDBLite | consensus disorder prediction | 208 | 236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1282 | Tan-Chr1:12543747 | Tan05g1236 | Tan-Chr5:12837964 | 1.60E-43 | dispersed | |
Tan01g1282 | Tan-Chr1:12543747 | Tan03g2048 | Tan-Chr3:75440332 | 6.00E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26344 | PF00320 | GATA | 5.20E-16 | CL0167 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g1282 | - | - | - | 0.0 |