Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1282 ATGCTTTACCGAACTCACCACCCATTTTTGTTCCCAAACAACCCCTCCCTTTTACTTTCCTTCTCTCTCTCTCTTCCTTTCTTTTTCATCCTCTTCTCTGCAACCACTCCTAAAACCAACGTCACAACTCTCAACCTCTTATCTTTTCCCCCCTCCCCCGTATTCAGGTACAGGTCGTCGTTACCGGACATGGAATGTGTTGATTCGGCTCTCAAAACGTGTTTCCGCAAGGAGATTTCCCTCAGCCCCCAACCCCATATCTGTTTTCATGATAATAATATCTCTTTTAATCCCCAGAATGTTCTCTCCTCCGATGATTTTTTCGTTGATCAACTCCTTGATTTGTCCCACCATGATGAATTTGTTCAACAAGATCAAGTTGCCCATGACGAAGATGATGATAAGACCTCCGTTTCCCTTTCCTTTTCTGTTTCTGCTCAAGAACTTCATCACAACTCCATTGTTTCCGACCTTCCTTCTTTGTCCTCCAGCGAACTTAGCGTTCCGGCCGATGAATTGGCAAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCTTTCTCTGGATTTTCCGCTCCCTTCCCCTCCGCTGGAATTTCTTCTTCCCTAGAGGCCGCCGTCGTTGAGGAGCAACCGGAGAACGACGGCTCCGTTTCGCCGCCGGAGCCCTGTTTCAAGTCCCCTGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTTGCTTCCCCGTCGTTGACCGAATCATCCTCCAGTTCTACGACGTCCTCCTCCTCCTCGTCGCCGACCAGTCCTTGGCTTATCATTTCCGACCCGGAAATTTTGGTCTCGAAGAAACAGAAGAGAAAGTCGCCGTCGGAAAAGGCAAGGACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGTCATTGCGGAGTCCAGAAAACCCCCCAGTGGAGAACCGGTCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTAGACTTTTACCCGAATACCGACCCGCCTGCAGTCCGACGTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTTCTCGAGATGCGCCGGAAAAAGGAAACGACCACCCCGACCGAGTTTTTGACCTCAGAAAAAAAATAG 1161 51.51 MLYRTHHPFLFPNNPSLLLSFSLSLPFFFILFSATTPKTNVTTLNLLSFPPSPVFRYRSSLPDMECVDSALKTCFRKEISLSPQPHICFHDNNISFNPQNVLSSDDFFVDQLLDLSHHDEFVQQDQVAHDEDDDKTSVSLSFSVSAQELHHNSIVSDLPSLSSSELSVPADELANLEWLSHFVEDSFSGFSAPFPSAGISSSLEAAVVEEQPENDGSVSPPEPCFKSPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPTSPWLIISDPEILVSKKQKRKSPSEKARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTTPTEFLTSEKK 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12543747 12545097 + Tan0012915.1 Tan01g1282 738706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1282 386 ProSitePatterns GATA-type zinc finger domain. 307 332 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 PANTHER GATA TRANSCRIPTION FACTOR 106 373 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan01g1282 386 Gene3D - 299 377 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan01g1282 386 CDD ZnF_GATA 306 354 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 MobiDBLite consensus disorder prediction 284 309 - -
Tan01g1282 386 MobiDBLite consensus disorder prediction 252 272 - -
Tan01g1282 386 SMART GATA_3 301 355 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 300 363 - -
Tan01g1282 386 ProSiteProfiles GATA-type zinc finger domain profile. 301 337 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 Pfam GATA zinc finger 307 341 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g1282 386 FunFam GATA transcription factor 297 382 - -
Tan01g1282 386 MobiDBLite consensus disorder prediction 208 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1282 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1282 Tan-Chr1:12543747 Tan05g1236 Tan-Chr5:12837964 1.60E-43 dispersed
Tan01g1282 Tan-Chr1:12543747 Tan03g2048 Tan-Chr3:75440332 6.00E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26344 PF00320 GATA 5.20E-16 CL0167 Tan TF